Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

This page was generated on 2022-04-13 12:07:05 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for phenopath on tokay2


To the developers/maintainers of the phenopath package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/phenopath.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1407/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phenopath 1.18.0  (landing page)
Kieran Campbell
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/phenopath
git_branch: RELEASE_3_14
git_last_commit: 2e3261b
git_last_commit_date: 2021-10-26 12:36:17 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: phenopath
Version: 1.18.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/phenopath_1.18.0.tar.gz && rm -rf phenopath.buildbin-libdir && mkdir phenopath.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenopath.buildbin-libdir phenopath_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL phenopath_1.18.0.zip && rm phenopath_1.18.0.tar.gz phenopath_1.18.0.zip
StartedAt: 2022-04-12 06:03:29 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:04:44 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 74.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/phenopath_1.18.0.tar.gz && rm -rf phenopath.buildbin-libdir && mkdir phenopath.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phenopath.buildbin-libdir phenopath_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL phenopath_1.18.0.zip && rm phenopath_1.18.0.tar.gz phenopath_1.18.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  425k  100  425k    0     0   562k      0 --:--:-- --:--:-- --:--:--  561k
100  425k  100  425k    0     0   561k      0 --:--:-- --:--:-- --:--:--  561k

install for i386

* installing *source* package 'phenopath' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cavi.cpp -o cavi.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o phenopath.dll tmp.def RcppExports.o cavi.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/phenopath.buildbin-libdir/00LOCK-phenopath/00new/phenopath/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phenopath'
    finding HTML links ... done
    clvm                                    html  
    interaction_effects                     html  
    interaction_sds                         html  
    interactions                            html  
    phenopath                               html  
    finding level-2 HTML links ... done

    plot_elbo                               html  
    print.phenopath_fit                     html  
    sample_fns                              html  
    scale_vec                               html  
    significant_interactions                html  
    simulate_one_gene                       html  
    simulate_phenopath                      html  
    trajectory                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phenopath' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cavi.cpp -o cavi.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o phenopath.dll tmp.def RcppExports.o cavi.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/phenopath.buildbin-libdir/phenopath/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phenopath' as phenopath_1.18.0.zip
* DONE (phenopath)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'phenopath' successfully unpacked and MD5 sums checked