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This page was generated on 2022-04-13 12:07:04 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for phemd on tokay2


To the developers/maintainers of the phemd package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/phemd.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1405/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phemd 1.10.0  (landing page)
William S Chen
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/phemd
git_branch: RELEASE_3_14
git_last_commit: ac301f6
git_last_commit_date: 2022-04-03 22:32:04 -0400 (Sun, 03 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: phemd
Version: 1.10.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/phemd_1.10.0.tar.gz && rm -rf phemd.buildbin-libdir && mkdir phemd.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phemd.buildbin-libdir phemd_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL phemd_1.10.0.zip && rm phemd_1.10.0.tar.gz phemd_1.10.0.zip
StartedAt: 2022-04-12 06:24:13 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:26:27 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 133.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/phemd_1.10.0.tar.gz && rm -rf phemd.buildbin-libdir && mkdir phemd.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phemd.buildbin-libdir phemd_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL phemd_1.10.0.zip && rm phemd_1.10.0.tar.gz phemd_1.10.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  479k  100  479k    0     0  1064k      0 --:--:-- --:--:-- --:--:-- 1066k

install for i386

* installing *source* package 'phemd' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phemd'
    finding HTML links ... done
    GDM                                     html  
    Phemd-methods                           html  
    Phemd                                   html  
    aggregateSamples                        html  
    all_expn_data                           html  
    all_genes                               html  
    assignCellClusterNearestNode            html  
    batchIDs                                html  
    bindSeuratObj                           html  
    celltypeFreqs                           html  
    clusterIndividualSamples                html  
    compareSamples                          html  
    createDataObj                           html  
    drawColnames45                          html  
    embedCells                              html  
    gaussianffLocal                         html  
    generateGDM                             html  
    getArithmeticCentroids                  html  
    getCellYield                            html  
    getSampleCelltypeFreqs                  html  
    getSampleHistsByCluster                 html  
    getSampleSizes                          html  
    groupSamples                            html  
    heatmap_genes                           html  
    identifyCentroids                       html  
    monocleInfo                             html  
    orderCellsMonocle                       html  
    phateInfo                               html  
    plotCellYield                           html  
    plotEmbeddings                          html  
    plotGroupedSamplesDmap                  html  
    plotHeatmaps                            html  
    plotSummaryHistograms                   html  
    pooledCells                             html  
    printClusterAssignments                 html  
    rawExpn                                 html  
    removeTinySamples                       html  
    retrieveRefClusters                     html  
    sNames                                  html  
    selectFeatures                          html  
    selectMarkers                           html  
    selected_genes                          html  
    seuratInfo                              html  
    snames_data                             html  
    subsampledBool                          html  
    subsampledIdx                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phemd' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'phemd' as phemd_1.10.0.zip
* DONE (phemd)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'phemd' successfully unpacked and MD5 sums checked