Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMN[O]PQRSTUVWXYZ

This page was generated on 2022-04-13 12:07:02 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for orthogene on tokay2


To the developers/maintainers of the orthogene package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/orthogene.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1352/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
orthogene 1.0.2  (landing page)
Brian Schilder
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/orthogene
git_branch: RELEASE_3_14
git_last_commit: be43cf5
git_last_commit_date: 2022-04-08 07:13:46 -0400 (Fri, 08 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: orthogene
Version: 1.0.2
Command: rm -rf orthogene.buildbin-libdir && mkdir orthogene.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=orthogene.buildbin-libdir orthogene_1.0.2.tar.gz
StartedAt: 2022-04-13 06:45:39 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:46:00 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 21.7 seconds
RetCode: 0
Status:   OK  
PackageFile: orthogene_1.0.2.zip
PackageFileSize: 1.939 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf orthogene.buildbin-libdir && mkdir orthogene.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=orthogene.buildbin-libdir orthogene_1.0.2.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'orthogene' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'orthogene'
    finding HTML links ... done
    add_synonyms                            html  
    aggregate_mapped_genes                  html  
    aggregate_rows                          html  
    all_genes                               html  
    all_genes_babelgene                     html  
    check_gene_df_type                      html  
    convert_orthologs                       html  
    create_background                       html  
    exp_mouse                               html  
    exp_mouse_enst                          html  
    get_orgdb_genomeinfodbdata              html  
    gprofiler_orgs                          html  
    infer_species                           html  
    invert_dictionary                       html  
    map_genes                               html  
    map_orthologs                           html  
    map_orthologs_babelgene                 html  
    map_orthologs_gprofiler                 html  
    map_orthologs_homologene                html  
    map_species                             html  
    message_parallel                        html  
    orthogene-package                       html  
    plot_benchmark_bar                      html  
    plot_benchmark_scatter                  html  
    report_orthologs                        html  
    run_benchmark                           html  
    taxa_id_dict                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'orthogene' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'orthogene' as orthogene_1.0.2.zip
* DONE (orthogene)