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This page was generated on 2022-01-21 13:08:11 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
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BUILD results for ngsReports on machv2


To the developers/maintainers of the ngsReports package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ngsReports.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1295/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ngsReports 1.10.0  (landing page)
Steve Pederson
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/ngsReports
git_branch: RELEASE_3_14
git_last_commit: b18d9df
git_last_commit_date: 2021-10-26 12:50:47 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ngsReports
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ngsReports
StartedAt: 2022-01-20 07:13:54 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 07:16:20 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 146.1 seconds
RetCode: 0
Status:   OK  
PackageFile: ngsReports_1.10.0.tar.gz
PackageFileSize: 2.601 MiB

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ngsReports
###
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* checking for file ‘ngsReports/DESCRIPTION’ ... OK
* preparing ‘ngsReports’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .......
Creating pdf output from LaTeX ...

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[]\T1/ptm/m/n/10 The un-der-ly-ing data from the Per_sequence_quality_scores mo
d-

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[]\T1/ptm/m/n/10 The un-der-ly-ing data from the Se-quence_Duplication_Levels m
od-

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[]\T1/ptm/m/n/10 Estimate taken from the plot data for Se-quence_Duplication_Le
vels.
[5] [6] [7] [8] [9] [10]
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\T1/zi4/m/n/10 Summary\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Basic_Statistics\T1/ptm/m
/n/10 , \T1/zi4/m/n/10 Per_base_sequence_quality\T1/ptm/m/n/10 , \T1/zi4/m/n/10
 Per_tile_sequence_quality\T1/ptm/m/n/10 ,

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ase_sequence_content\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Per_sequence_GC_content\T1/
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h_Distribution\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Sequence_Duplication_Levels\T1/pt
m/m/n/10 ,

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\T1/zi4/m/n/10 Overrepresented_sequences\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Adapter
_Content\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Kmer_Content\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 Total_Deduplicated_Percentage\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 When act-ing on a \T1/zi4/m/n/10 FastqcDataList\T1/ptm/m/n/10 
, this de-faults to a heatmap us-ing the mean Per_base_sequence_quality
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[]\T1/zi4/m/n/10 character \T1/ptm/m/n/10 vec-tor con-tain-ing the de-sired Fas
tQC mod-ule (eg. c("Per_base_sequence_quality",
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[]\T1/ptm/m/n/10 The colour palette. If the vec-tor sup-plied is less than n, \
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Output written on Rd2.pdf (51 pages, 173815 bytes).
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[]\T1/ptm/m/n/10 The un-der-ly-ing data from the Per_sequence_quality_scores mo
d-

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od-
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[]\T1/ptm/m/n/10 Estimate taken from the plot data for Se-quence_Duplication_Le
vels.
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\T1/zi4/m/n/10 Summary\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Basic_Statistics\T1/ptm/m
/n/10 , \T1/zi4/m/n/10 Per_base_sequence_quality\T1/ptm/m/n/10 , \T1/zi4/m/n/10
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\T1/zi4/m/n/10 Per_sequence_quality_scores\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Per_b
ase_sequence_content\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Per_sequence_GC_content\T1/
ptm/m/n/10 ,

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\T1/zi4/m/n/10 Per_base_N_content\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Sequence_Lengt
h_Distribution\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Sequence_Duplication_Levels\T1/pt
m/m/n/10 ,

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\T1/zi4/m/n/10 Overrepresented_sequences\T1/ptm/m/n/10 , \T1/zi4/m/n/10 Adapter
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n/10 Total_Deduplicated_Percentage\T1/ptm/m/n/10 .
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