| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:59 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the nanotatoR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nanotatoR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1268/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nanotatoR 1.10.0 (landing page) Surajit Bhattacharya
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: nanotatoR |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/nanotatoR_1.10.0.tar.gz && rm -rf nanotatoR.buildbin-libdir && mkdir nanotatoR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nanotatoR.buildbin-libdir nanotatoR_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL nanotatoR_1.10.0.zip && rm nanotatoR_1.10.0.tar.gz nanotatoR_1.10.0.zip |
| StartedAt: 2022-04-12 06:52:19 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:54:55 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 155.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/nanotatoR_1.10.0.tar.gz && rm -rf nanotatoR.buildbin-libdir && mkdir nanotatoR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nanotatoR.buildbin-libdir nanotatoR_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL nanotatoR_1.10.0.zip && rm nanotatoR_1.10.0.tar.gz nanotatoR_1.10.0.zip
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install for i386
* installing *source* package 'nanotatoR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'nanotatoR'
finding HTML links ... done
BNDBfrequency html
DGVfrequency html
Decipherfrequency html
FamilyInfoPrep html
OverlapRNAseq html
OverlapRNAseq_solo html
RNAseqcombine html
RNAseqcombine_solo html
SVexpression_duo_trio html
SVexpression_solo html
buildrunBNBedFiles html
clinvar_gene html
extract_clinvar_mod html
gene_extraction html
gene_list_generation html
gtr_gene html
internalFrequencyTrio_Duo html
internalFrequency_solo html
makeInternalBNDatabase html
mergingSMAP_SE html
mergingSMAP_SVMerge html
merging_SE_SVMerge html
nanotatoR html
nanotatoR_Duo_SVmerge html
nanotatoR_SVmerge_Trio html
nanotatoR_main_Duo_SE html
nanotatoR_main_Solo_SE html
nanotatoR_main_Solo_SVmerge html
nanotatoR_main_Trio_SE html
nonOverlapGenes html
nonOverlapRNAseq html
nonOverlapRNAseq_solo html
nonOverlappingDNGenes html
nonOverlappingUPGenes html
omim_gene html
overlapGenes html
overlapnearestgeneSearch html
overlappingGenes html
phenoextractHPO_mod html
readBNBedFiles html
readSMap html
readSMap_DLE html
reading_GTR html
reading_mim2gene html
run_bionano_filter_SE_Trio html
run_bionano_filter_SE_duo html
run_bionano_filter_SE_solo html
run_bionano_filter_SVMerge_Trio html
run_bionano_filter_SVMerge_duo html
run_bionano_filter_SVMerge_solo html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'nanotatoR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nanotatoR' as nanotatoR_1.10.0.zip
* DONE (nanotatoR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'nanotatoR' successfully unpacked and MD5 sums checked