Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:58 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for muscat on tokay2


To the developers/maintainers of the muscat package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/muscat.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1253/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
muscat 1.8.2  (landing page)
Helena L. Crowell
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/muscat
git_branch: RELEASE_3_14
git_last_commit: 498aea3
git_last_commit_date: 2022-03-09 06:19:13 -0400 (Wed, 09 Mar 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: muscat
Version: 1.8.2
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/muscat_1.8.2.tar.gz && rm -rf muscat.buildbin-libdir && mkdir muscat.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=muscat.buildbin-libdir muscat_1.8.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL muscat_1.8.2.zip && rm muscat_1.8.2.tar.gz muscat_1.8.2.zip
StartedAt: 2022-04-12 06:41:05 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:44:11 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 185.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/muscat_1.8.2.tar.gz && rm -rf muscat.buildbin-libdir && mkdir muscat.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=muscat.buildbin-libdir muscat_1.8.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL muscat_1.8.2.zip && rm muscat_1.8.2.tar.gz muscat_1.8.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 67 1619k   67 1091k    0     0  1218k      0  0:00:01 --:--:--  0:00:01 1218k
100 1619k  100 1619k    0     0  1398k      0  0:00:01  0:00:01 --:--:-- 1400k

install for i386

* installing *source* package 'muscat' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
  Package version inconsistency detected.
glmmTMB was built with TMB version 1.8.0
Current TMB version is 1.8.1
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
** help
*** installing help indices
  converting help for package 'muscat'
    finding HTML links ... done
    aggregateData                           html  
    calcExprFreqs                           html  
    data                                    html  
    mmDS                                    html  
    pbDS                                    html  
    pbFlatten                               html  
    pbHeatmap                               html  
    finding level-2 HTML links ... done

    pbMDS                                   html  
    prepSCE                                 html  
    prepSim                                 html  
    resDS                                   html  
    simData                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
  Package version inconsistency detected.
glmmTMB was built with TMB version 1.8.0
Current TMB version is 1.8.1
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
** testing if installed package can be loaded from final location
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
  Package version inconsistency detected.
glmmTMB was built with TMB version 1.8.0
Current TMB version is 1.8.1
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'muscat' ...
** testing if installed package can be loaded
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
  Package version inconsistency detected.
glmmTMB was built with TMB version 1.8.0
Current TMB version is 1.8.1
Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information)
* MD5 sums
packaged installation of 'muscat' as muscat_1.8.2.zip
* DONE (muscat)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'muscat' successfully unpacked and MD5 sums checked