Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:05:38 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for mosbi on nebbiolo2


To the developers/maintainers of the mosbi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mosbi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1198/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mosbi 1.0.3  (landing page)
Tim Daniel Rose
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/mosbi
git_branch: RELEASE_3_14
git_last_commit: fa15c49
git_last_commit_date: 2022-02-01 03:09:20 -0400 (Tue, 01 Feb 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: mosbi
Version: 1.0.3
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL mosbi
StartedAt: 2022-04-12 03:32:17 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 03:33:54 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 97.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL mosbi
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘mosbi’ ...
** using staged installation
** libs
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c attr_graph.cpp -o attr_graph.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c attributeConnector.cpp -o attributeConnector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c attribute_overlap.cpp -o attribute_overlap.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c bicluster_methods.cpp -o bicluster_methods.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c boost_graph.cpp -o boost_graph.o
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from boost_graph.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function_template.hpp:13,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/maybe_include.hpp:36,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function3.hpp:11,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphviz.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphml.hpp:20,
                 from boost_graph.cpp:3:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c boost_write.cpp -o boost_write.o
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from boost_write.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  507 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  520 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  603 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  612 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  614 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function_template.hpp:13,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/maybe_include.hpp:36,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function3.hpp:11,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphviz.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphml.hpp:20,
                 from boost_write.cpp:3:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c distance_matrix.cpp -o distance_matrix.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c extractBF.cpp -o extractBF.o
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function.hpp:30,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:23,
                 from extractBF.cpp:3:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from extractBF.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c extractQUBIC2.cpp -o extractQUBIC2.o
In file included from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function.hpp:30,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:23,
                 from extractQUBIC2.cpp:7:
/home/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
      |                                        ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from extractQUBIC2.cpp:2:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c full_graph.cpp -o full_graph.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c misc.cpp -o misc.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c network_edge_strength.cpp -o network_edge_strength.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c sample_biclusters.cpp -o sample_biclusters.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I/usr/local/include   -fpic  -g -O2  -c write_matrix.cpp -o write_matrix.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o mosbi.so RcppExports.o attr_graph.o attributeConnector.o attribute_overlap.o bicluster_methods.o boost_graph.o boost_write.o distance_matrix.o extractBF.o extractQUBIC2.o full_graph.o misc.o network_edge_strength.o sample_biclusters.o write_matrix.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-mosbi/00new/mosbi/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mosbi)