Rui Guan
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/mina |
| git_branch: RELEASE_3_14 |
| git_last_commit: 0c8ce8b |
| git_last_commit_date: 2021-10-26 13:05:26 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:54 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mina package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mina.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1153/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mina 1.2.0 (landing page) Rui Guan
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: mina |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/mina_1.2.0.tar.gz && rm -rf mina.buildbin-libdir && mkdir mina.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mina.buildbin-libdir mina_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL mina_1.2.0.zip && rm mina_1.2.0.tar.gz mina_1.2.0.zip |
| StartedAt: 2022-04-12 05:18:41 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:24:08 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 327.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/mina_1.2.0.tar.gz && rm -rf mina.buildbin-libdir && mkdir mina.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mina.buildbin-libdir mina_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL mina_1.2.0.zip && rm mina_1.2.0.tar.gz mina_1.2.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
1 4435k 1 78199 0 0 401k 0 0:00:11 --:--:-- 0:00:11 401k
32 4435k 32 1450k 0 0 1203k 0 0:00:03 0:00:01 0:00:02 1203k
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100 4435k 100 4435k 0 0 1541k 0 0:00:02 0:00:02 --:--:-- 1541k
install for i386
* installing *source* package 'mina' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cp_cor.cpp -o cp_cor.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mina.dll tmp.def RcppExports.o cp_cor.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mina.buildbin-libdir/00LOCK-mina/00new/mina/libs/i386
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'norm' in package 'mina'
** help
*** installing help indices
converting help for package 'mina'
finding HTML links ... done
adj-matrix html
adj-mina html
adj html
adj_accessor html
adj_method_list html
bs_pm-mina html
bs_pm html
bs_pm_accessor html
check_mina html
check_mina_de html
check_mina_qu html
cls html
cls_accessor html
cls_tab html
cls_tab_accessor html
com_dis-matrix html
com_dis-mina html
com_dis html
com_dis_list html
com_plot-mina html
com_plot html
com_r2-mina html
com_r2 html
cp_cor html
data-hmp html
data-maize html
des_accessor html
dis_accessor html
dis_stat_accessor html
dmr-matrix html
dmr-mina html
dmr html
dmr_accessor html
filter_mat html
fit_tabs-mina html
fit_tabs html
get_contrast html
get_contrast_grp html
get_dis_df html
get_ja html
get_ja0 html
get_ja0_grp html
get_ja_grp html
get_net_cls_tab-matrix-data.frame-method
html
get_net_cls_tab html
get_r2-mat html
get_r2 html
get_rep-matrix html
get_rep-mima html
get_spectra html
get_stat html
hmp_des html
hmp_otu html
maize_asv html
maize_asv2 html
maize_des html
maize_des2 html
mat_or_NULL-class html
mina-class html
net_cls-matrix html
net_cls-mina html
net_cls html
net_cls_tab-mina-method html
net_cls_tab html
net_dis-mina html
net_dis html
net_dis_accessor html
net_dis_indi html
net_dis_pcoa html
net_dis_plot html
net_grp_cmp html
net_node_cmp html
norm_accessor html
norm_by_raref html
norm_by_total html
norm_tab-matrix html
norm_tab-mina html
norm_tab html
norm_tab_method_list html
pcoa_plot html
rarefaction_subsample html
re_format_AP html
re_format_MCL html
sim_par html
sparcc html
tab_accessor html
tina-matrix-method html
tina html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'mina' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cp_cor.cpp -o cp_cor.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mina.dll tmp.def RcppExports.o cp_cor.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mina.buildbin-libdir/mina/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mina' as mina_1.2.0.zip
* DONE (mina)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'mina' successfully unpacked and MD5 sums checked