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This page was generated on 2022-04-13 12:06:53 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for microbiomeExplorer on tokay2


To the developers/maintainers of the microbiomeExplorer package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/microbiomeExplorer.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1143/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
microbiomeExplorer 1.4.0  (landing page)
Janina Reeder
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/microbiomeExplorer
git_branch: RELEASE_3_14
git_last_commit: 556ec83
git_last_commit_date: 2021-10-26 13:03:40 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: microbiomeExplorer
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/microbiomeExplorer_1.4.0.tar.gz && rm -rf microbiomeExplorer.buildbin-libdir && mkdir microbiomeExplorer.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiomeExplorer.buildbin-libdir microbiomeExplorer_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL microbiomeExplorer_1.4.0.zip && rm microbiomeExplorer_1.4.0.tar.gz microbiomeExplorer_1.4.0.zip
StartedAt: 2022-04-12 06:50:50 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:53:59 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 188.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/microbiomeExplorer_1.4.0.tar.gz && rm -rf microbiomeExplorer.buildbin-libdir && mkdir microbiomeExplorer.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=microbiomeExplorer.buildbin-libdir microbiomeExplorer_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL microbiomeExplorer_1.4.0.zip && rm microbiomeExplorer_1.4.0.tar.gz microbiomeExplorer_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 21 1770k   21  386k    0     0  1139k      0  0:00:01 --:--:--  0:00:01 1138k
100 1770k  100 1770k    0     0  1974k      0 --:--:-- --:--:-- --:--:-- 1974k

install for i386

* installing *source* package 'microbiomeExplorer' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'microbiomeExplorer'
    finding HTML links ... done
    abundanceHeatmap                        html  
    abundanceHeatmapUI                      html  
    addFeatData                             html  
    addPhenoData                            html  
    add_plotly_config                       html  
    add_plotly_layout                       html  
    aggFeatures                             html  
    aggregationTab                          html  
    aggregationTabUI                        html  
    alphaDiversity                          html  
    alphaDiversityUI                        html  
    avgAbundance                            html  
    avgAbundanceUI                          html  
    betaDiversity                           html  
    betaDiversityUI                         html  
    betaInput                               html  
    betaInputUI                             html  
    buildEmptyPlotlyPlot                    html  
    buildPlottingDF                         html  
    calculatePCAs                           html  
    computeCI_Interval                      html  
    computeDistMat                          html  
    corrAnalysis                            html  
    corrAnalysisUI                          html  
    corrFeature                             html  
    corrInput                               html  
    corrInputUI                             html  
    corrPhenotype                           html  
    createHeader                            html  
    dataInput                               html  
    dataInputUI                             html  
    designPairs                             html  
    diffAnalysis                            html  
    diffAnalysisUI                          html  
    diffInput                               html  
    diffInputUI                             html  
    diffTable                               html  
    diffTableUI                             html  
    extendPhenoData                         html  
    featAbundance                           html  
    featAbundanceUI                         html  
    featureAnalysis                         html  
    featureAnalysisUI                       html  
    featureCorr                             html  
    featureCorrUI                           html  
    featureInput                            html  
    featureInputUI                          html  
    featureTable                            html  
    featureTableUI                          html  
    fileUpload                              html  
    fileUploadUI                            html  
    filterByPheno                           html  
    filterMEData                            html  
    generateReport                          html  
    getFeatModCode                          html  
    getFileType                             html  
    getFilterChoices                        html  
    getLegendLevel                          html  
    getPhenoChanges                         html  
    getPhenoModCode                         html  
    getWidths                               html  
    heatmapInput                            html  
    heatmapInputUI                          html  
    interAnalysis                           html  
    interAnalysisUI                         html  
    intraAnalysis                           html  
    intraAnalysisUI                         html  
    intraInput                              html  
    intraInputUI                            html  
    longAnalysis                            html  
    longAnalysisUI                          html  
    longInput                               html  
    longInputUI                             html  
    longResults                             html  
    longResultsUI                           html  
    makeQCPlot                              html  
    normalizeData                           html  
    parseInteractionName                    html  
    phenotypeCorr                           html  
    phenotypeCorrUI                         html  
    phenotypeTable                          html  
    phenotypeTableUI                        html  
    plotAbundance                           html  
    plotAlpha                               html  
    plotAvgAbundance                        html  
    plotBeta                                html  
    plotHeatmap                             html  
    plotLongFeature                         html  
    plotSingleFeature                       html  
    plotlyHistogram                         html  
    plotlySampleBarplot                     html  
    readData                                html  
    relAbundance                            html  
    relAbundanceUI                          html  
    replaceWithUnknown                      html  
    reportList                              html  
    reportListUI                            html  
    reportRow                               html  
    reportRowUI                             html  
    rollDownFeatures                        html  
    runDiffTest                             html  
    runMicrobiomeExplorer                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'microbiomeExplorer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'microbiomeExplorer' as microbiomeExplorer_1.4.0.zip
* DONE (microbiomeExplorer)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'microbiomeExplorer' successfully unpacked and MD5 sums checked