Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:05:37 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for miQC on nebbiolo2


To the developers/maintainers of the miQC package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/miQC.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1159/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miQC 1.2.0  (landing page)
Ariel Hippen
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/miQC
git_branch: RELEASE_3_14
git_last_commit: ad367e9
git_last_commit_date: 2021-10-26 13:07:33 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: miQC
Version: 1.2.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data miQC
StartedAt: 2022-04-12 05:02:25 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:03:49 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 83.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data miQC
###
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* checking for file ‘miQC/DESCRIPTION’ ... OK
* preparing ‘miQC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘miQC.Rmd’ using rmarkdown
snapshotDate(): 2021-10-19
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
loading from cache
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
loading from cache
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
loading from cache
snapshotDate(): 2021-10-19
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
loading from cache
snapshotDate(): 2021-10-19
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
loading from cache
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
loading from cache
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
loading from cache
snapshotDate(): 2021-10-19
see ?scRNAseq and browseVignettes('scRNAseq') for documentation
loading from cache
Warning in min(metrics[!metrics$keep, ]$subsets_mito_percent) :
  no non-missing arguments to min; returning Inf
Quitting from lines 247-249 (miQC.Rmd) 
Error: processing vignette 'miQC.Rmd' failed with diagnostics:
replacement has 1 row, data has 0
--- failed re-building ‘miQC.Rmd’

SUMMARY: processing the following file failed:
  ‘miQC.Rmd’

Error: Vignette re-building failed.
Execution halted