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This page was generated on 2022-01-14 13:06:41 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for metabomxtr on tokay2


To the developers/maintainers of the metabomxtr package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabomxtr.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1093/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabomxtr 1.28.0  (landing page)
Michael Nodzenski
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/metabomxtr
git_branch: RELEASE_3_14
git_last_commit: dd76cf2
git_last_commit_date: 2021-10-26 12:15:03 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: metabomxtr
Version: 1.28.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:metabomxtr.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings metabomxtr_1.28.0.tar.gz
StartedAt: 2022-01-13 22:06:25 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 22:10:01 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 216.2 seconds
RetCode: 0
Status:   OK  
CheckDir: metabomxtr.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:metabomxtr.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings metabomxtr_1.28.0.tar.gz
###
##############################################################################
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/metabomxtr.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metabomxtr/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'metabomxtr' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'metabomxtr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
metabplot          1.00   0.19    6.41
metabomxtr-package 1.11   0.05   16.17
mxtrmod            0.89   0.01   19.95
mxtrmodLRT         0.51   0.04   10.46
mixnorm            0.33   0.03    5.20
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
metabomxtr-package 1.20   0.04   15.86
metabplot          1.09   0.06    6.44
mxtrmod            1.03   0.01   19.66
mxtrmodLRT         0.59   0.02   10.47
mixnorm            0.46   0.00    5.29
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

metabomxtr.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metabomxtr_1.28.0.tar.gz && rm -rf metabomxtr.buildbin-libdir && mkdir metabomxtr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabomxtr.buildbin-libdir metabomxtr_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metabomxtr_1.28.0.zip && rm metabomxtr_1.28.0.tar.gz metabomxtr_1.28.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  4 60918    4  2489    0     0   7789      0  0:00:07 --:--:--  0:00:07  7778
100 60918  100 60918    0     0   185k      0 --:--:-- --:--:-- --:--:--  185k

install for i386

* installing *source* package 'metabomxtr' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'metabomxtr'
    finding HTML links ... done
    addBatchMeans                           html  
    addOutlierInfo                          html  
    allMissingLevels                        html  
    anyMissingLevels                        html  
    euMetabCData                            html  
    euMetabData                             html  
    idMissingLevels                         html  
    metabdata                               html  
    metabomxtr-package                      html  
    metabplot                               html  
    mixnorm                                 html  
    mxtrmod                                 html  
    mxtrmodLL                               html  
    mxtrmodLRT                              html  
    mxtrmodstart                            html  
    removeAllMissingCatVar                  html  
    removeMissingLevels                     html  
    runMxtrmod                              html  
    xdesign-methods                         html  
    yvals-methods                           html  
    zdesign-methods                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metabomxtr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metabomxtr' as metabomxtr_1.28.0.zip
* DONE (metabomxtr)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'metabomxtr' successfully unpacked and MD5 sums checked

Tests output


Example timings

metabomxtr.Rcheck/examples_i386/metabomxtr-Ex.timings

nameusersystemelapsed
addBatchMeans0.050.000.05
addOutlierInfo0.000.000.01
allMissingLevels000
anyMissingLevels0.000.020.01
idMissingLevels0.000.010.02
metabomxtr-package 1.11 0.0516.17
metabplot1.000.196.41
mixnorm0.330.035.20
mxtrmod 0.89 0.0119.95
mxtrmodLL000
mxtrmodLRT 0.51 0.0410.46
mxtrmodstart0.020.000.01
removeAllMissingCatVar000
removeMissingLevels0.010.000.02
runMxtrmod1.130.001.12

metabomxtr.Rcheck/examples_x64/metabomxtr-Ex.timings

nameusersystemelapsed
addBatchMeans0.040.000.03
addOutlierInfo000
allMissingLevels000
anyMissingLevels000
idMissingLevels000
metabomxtr-package 1.20 0.0415.86
metabplot1.090.066.44
mixnorm0.460.005.29
mxtrmod 1.03 0.0119.66
mxtrmodLL000
mxtrmodLRT 0.59 0.0210.47
mxtrmodstart0.000.010.02
removeAllMissingCatVar000
removeMissingLevels000
runMxtrmod1.240.001.23