Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:49 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for made4 on tokay2


To the developers/maintainers of the made4 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/made4.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1032/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
made4 1.68.0  (landing page)
Aedin Culhane
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/made4
git_branch: RELEASE_3_14
git_last_commit: b32f979
git_last_commit_date: 2021-10-26 11:47:44 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: made4
Version: 1.68.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:made4.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings made4_1.68.0.tar.gz
StartedAt: 2022-04-12 22:08:51 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 22:12:03 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 192.3 seconds
RetCode: 0
Status:   OK  
CheckDir: made4.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:made4.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings made4_1.68.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/made4.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'made4/DESCRIPTION' ... OK
* this is package 'made4' version '1.68.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'made4' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/made4.Rcheck/00check.log'
for details.



Installation output

made4.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/made4_1.68.0.tar.gz && rm -rf made4.buildbin-libdir && mkdir made4.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=made4.buildbin-libdir made4_1.68.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL made4_1.68.0.zip && rm made4_1.68.0.tar.gz made4_1.68.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 23  699k   23  161k    0     0   389k      0  0:00:01 --:--:--  0:00:01  389k
100  699k  100  699k    0     0   668k      0  0:00:01  0:00:01 --:--:--  668k

install for i386

* installing *source* package 'made4' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'made4'
    finding HTML links ... done
    NCI60                                   html  
    asDataFrame                             html  
    bet.coinertia                           html  
    between.graph                           html  
    bga                                     html  
    bga.jackknife                           html  
    bga.suppl                               html  
    checkfac                                html  
    chime3D                                 html  
    cia                                     html  
    commonMap                               html  
    comparelists                            html  
    do3d                                    html  
    dudi.rwcoa                              html  
    forrwcoa                                html  
    genes                                   html  
    genes1d                                 html  
    getcol                                  html  
    graph1D                                 html  
    heatplot                                html  
    html3D                                  html  
    isDataFrame                             html  
    jmol3D                                  html  
    khan                                    html  
    ord                                     html  
    overview                                html  
    plotarrays                              html  
    plotgenes                               html  
    prettyDend                              html  
    randomiser                              html  
    s.var                                   html  
    sumstats                                html  
    suppl                                   html  
    topgenes                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'made4' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'made4' as made4_1.68.0.zip
* DONE (made4)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'made4' successfully unpacked and MD5 sums checked

Tests output


Example timings

made4.Rcheck/examples_i386/made4-Ex.timings

nameusersystemelapsed
NCI600.010.000.01
bet.coinertia0.020.000.02
between.graph0.290.090.39
bga0.410.050.45
bga.jackknife1.390.151.55
bga.suppl0.330.040.36
cia0.160.010.17
commonMap0.030.000.03
comparelists0.010.000.02
do3d0.360.000.36
genes1d0.080.000.08
getcol0.030.000.03
graph1D0.060.030.09
heatplot2.250.022.27
html3D0.190.000.18
isDataFrame0.020.000.02
khan000
ord0.250.020.27
overview0.140.010.16
plotarrays0.220.020.23
plotgenes0.120.000.13
prettyDend0.100.020.11
randomiser000
s.var0.20.00.2
sumstats0.170.010.19
suppl0.370.020.39
topgenes0.060.010.08

made4.Rcheck/examples_x64/made4-Ex.timings

nameusersystemelapsed
NCI600.030.000.03
bet.coinertia0.010.000.01
between.graph0.400.010.43
bga1.190.021.20
bga.jackknife1.830.091.92
bga.suppl0.390.000.39
cia0.190.000.19
commonMap0.030.000.04
comparelists000
do3d0.440.000.43
genes1d0.080.000.08
getcol0.030.000.03
graph1D0.080.000.08
heatplot2.790.102.89
html3D0.950.000.98
isDataFrame0.030.000.03
khan0.000.010.02
ord0.410.000.40
overview0.220.000.22
plotarrays0.440.000.44
plotgenes0.140.020.16
prettyDend0.150.000.15
randomiser000
s.var0.380.010.39
sumstats0.190.020.21
suppl0.710.000.71
topgenes0.070.000.07