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This page was generated on 2022-04-13 12:06:43 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for iClusterPlus on tokay2


To the developers/maintainers of the iClusterPlus package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iClusterPlus.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 907/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iClusterPlus 1.30.0  (landing page)
Qianxing Mo , Ronglai Shen
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/iClusterPlus
git_branch: RELEASE_3_14
git_last_commit: 37ea735
git_last_commit_date: 2021-10-26 12:11:34 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: iClusterPlus
Version: 1.30.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:iClusterPlus.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings iClusterPlus_1.30.0.tar.gz
StartedAt: 2022-04-12 21:18:27 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 21:23:00 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 273.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: iClusterPlus.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:iClusterPlus.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings iClusterPlus_1.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/iClusterPlus.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'iClusterPlus/DESCRIPTION' ... OK
* this is package 'iClusterPlus' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'iClusterPlus' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.6Mb
  sub-directories of 1Mb or more:
    data  17.9Mb
    doc    4.2Mb
    libs   1.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Found a 'configure.in' file: 'configure.ac' has long been preferred.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CNregions: no visible binding for global variable 'chromosome'
CNregions: no visible binding for global variable 'num.mark'
CNregions: no visible global function definition for 'GRanges'
CNregions: no visible global function definition for 'IRanges'
CNregions: no visible global function definition for 'findOverlaps'
CNregions : get.medoid: no visible global function definition for 'pam'
classError: no visible global function definition for 'mapClass'
plotHMBayes: no visible global function definition for 'bluered'
plotHMBayes : my.panel.levelplot: no visible global function definition
  for 'panel.levelplot'
plotHMBayes : my.panel.levelplot: no visible global function definition
  for 'panel.abline'
plotHMBayes : my.panel.levelplot.2: no visible global function
  definition for 'panel.levelplot'
plotHMBayes : my.panel.levelplot.2: no visible global function
  definition for 'panel.abline'
plotHMBayes: no visible global function definition for 'levelplot'
plotHeatmap: no visible global function definition for 'bluered'
plotHeatmap : my.panel.levelplot: no visible global function definition
  for 'panel.levelplot'
plotHeatmap : my.panel.levelplot: no visible global function definition
  for 'panel.abline'
plotHeatmap : my.panel.levelplot.2: no visible global function
  definition for 'panel.levelplot'
plotHeatmap : my.panel.levelplot.2: no visible global function
  definition for 'panel.abline'
plotHeatmap: no visible global function definition for 'levelplot'
tune.iCluster2: no visible binding for global variable 'glp'
tune.iClusterPlus: no visible binding for global variable 'glp'
Undefined global functions or variables:
  GRanges IRanges bluered chromosome findOverlaps glp levelplot
  mapClass num.mark pam panel.abline panel.levelplot
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 17.8 MB without LazyDataCompression set
  See ยง1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/iClusterPlus/libs/i386/iClusterPlus.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
  Found 'rand', possibly from 'rand' (C)
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/iClusterPlus/libs/x64/iClusterPlus.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'rand', possibly from 'rand' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/iClusterPlus.Rcheck/00check.log'
for details.



Installation output

iClusterPlus.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/iClusterPlus_1.30.0.tar.gz && rm -rf iClusterPlus.buildbin-libdir && mkdir iClusterPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iClusterPlus.buildbin-libdir iClusterPlus_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL iClusterPlus_1.30.0.zip && rm iClusterPlus_1.30.0.tar.gz iClusterPlus_1.30.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 20.2M    0 22757    0     0   192k      0  0:01:47 --:--:--  0:01:47  191k
  5 20.2M    5 1223k    0     0  1093k      0  0:00:18  0:00:01  0:00:17 1093k
 16 20.2M   16 3347k    0     0  1580k      0  0:00:13  0:00:02  0:00:11 1580k
 30 20.2M   30 6413k    0     0  2056k      0  0:00:10  0:00:03  0:00:07 2056k
 50 20.2M   50 10.1M    0     0  2524k      0  0:00:08  0:00:04  0:00:04 2524k
 72 20.2M   72 14.6M    0     0  2946k      0  0:00:07  0:00:05  0:00:02 3010k
100 20.2M  100 20.2M    0     0  3393k      0  0:00:06  0:00:06 --:--:-- 3909k

install for i386

* installing *source* package 'iClusterPlus' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function 'mcmcBayes':
iClusterBayes.c:1212:28: warning: variable 'Zdraw' set but not used [-Wunused-but-set-variable]
   int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
                            ^~~~~
iClusterBayes.c:1212:20: warning: variable 'Zburnin' set but not used [-Wunused-but-set-variable]
   int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
                    ^~~~~~~
iClusterBayes.c:1600:13: warning: 'gb4' may be used uninitialized in this function [-Wmaybe-uninitialized]
     gb4[ID] = b4[ID]*gamma4[j];
     ~~~~~~~~^~~~~~~~~~~~~~~~~~
iClusterBayes.c:1575:13: warning: 'gb3' may be used uninitialized in this function [-Wmaybe-uninitialized]
     gb3[ID] = b3[ID]*gamma3[j];
     ~~~~~~~~^~~~~~~~~~~~~~~~~~
iClusterBayes.c:1475:5: warning: 'gb2' may be used uninitialized in this function [-Wmaybe-uninitialized]
     mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty0,&p0,a0,gb0,con0,cat0,sigma0,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty1,&p1,a1,gb1,con1,cat1,sigma1,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty2,&p2,a2,gb2,con2,cat2,sigma2,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty3,&p3,a3,gb3,con3,cat3,sigma3,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty4,&p4,a4,gb4,con4,cat4,sigma4,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1475:5: warning: 'gb1' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1475:5: warning: 'gb0' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1625:13: warning: 'gb5' may be used uninitialized in this function [-Wmaybe-uninitialized]
     gb5[ID] = b5[ID]*gamma5[j];
     ~~~~~~~~^~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iClusterPlus.c -o iClusterPlus.o
"C:/rtools40/mingw32/bin/"gfortran  -fno-optimize-sibling-calls -fdefault-real-8 -ffixed-form   -O2  -mfpmath=sse -msse2 -mstackrealign  -c  newGLMnet.f90 -o newGLMnet.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o iClusterPlus.dll tmp.def iClusterBayes.o iClusterPlus.o newGLMnet.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/iClusterPlus.buildbin-libdir/00LOCK-iClusterPlus/00new/iClusterPlus/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'iClusterPlus'
    finding HTML links ... done
    CNregions                               html  
    breast.chr17                            html  
    compute.pod                             html  
    coord                                   html  
    gbm                                     html  
    glp                                     html  
    iCluster                                html  
    iCluster2                               html  
    iClusterBayes                           html  
    iClusterPlus                            html  
    plotHMBayes                             html  
    plotHeatmap                             html  
    plotRI                                  html  
    plotiCluster                            html  
    simuResult                              html  
    tune.iCluster2                          html  
    tune.iClusterBayes                      html  
    tune.iClusterPlus                       html  
    utility                                 html  
    variation.hg18.v10.nov.2010             html  
** building package indices
** installing vignettes
   'iClusterPlus.Rnw' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iClusterPlus' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function 'mcmcBayes':
iClusterBayes.c:1212:28: warning: variable 'Zdraw' set but not used [-Wunused-but-set-variable]
   int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
                            ^~~~~
iClusterBayes.c:1212:20: warning: variable 'Zburnin' set but not used [-Wunused-but-set-variable]
   int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
                    ^~~~~~~
iClusterBayes.c:1446:13: warning: 'gb4' may be used uninitialized in this function [-Wmaybe-uninitialized]
     gb4[ID] = b4[ID]*gamma4[j];
     ~~~~~~~~^~~~~~~~~~~~~~~~~~
iClusterBayes.c:1431:13: warning: 'gb3' may be used uninitialized in this function [-Wmaybe-uninitialized]
     gb3[ID] = b3[ID]*gamma3[j];
     ~~~~~~~~^~~~~~~~~~~~~~~~~~
iClusterBayes.c:1475:5: warning: 'gb2' may be used uninitialized in this function [-Wmaybe-uninitialized]
     mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty0,&p0,a0,gb0,con0,cat0,sigma0,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty1,&p1,a1,gb1,con1,cat1,sigma1,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty2,&p2,a2,gb2,con2,cat2,sigma2,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty3,&p3,a3,gb3,con3,cat3,sigma3,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty4,&p4,a4,gb4,con4,cat4,sigma4,
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1475:5: warning: 'gb1' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1475:5: warning: 'gb0' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1461:13: warning: 'gb5' may be used uninitialized in this function [-Wmaybe-uninitialized]
     gb5[ID] = b5[ID]*gamma5[j];
     ~~~~~~~~^~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c iClusterPlus.c -o iClusterPlus.o
"C:/rtools40/mingw64/bin/"gfortran  -fno-optimize-sibling-calls -fdefault-real-8 -ffixed-form   -O2  -mfpmath=sse -msse2 -mstackrealign  -c  newGLMnet.f90 -o newGLMnet.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o iClusterPlus.dll tmp.def iClusterBayes.o iClusterPlus.o newGLMnet.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/iClusterPlus.buildbin-libdir/iClusterPlus/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iClusterPlus' as iClusterPlus_1.30.0.zip
* DONE (iClusterPlus)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'iClusterPlus' successfully unpacked and MD5 sums checked

Tests output

iClusterPlus.Rcheck/tests_i386/runTests.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("iClusterPlus")


RUNIT TEST PROTOCOL -- Tue Apr 12 21:21:24 2022 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
iClusterPlus RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> 
> proc.time()
   user  system elapsed 
  90.51    0.18   92.14 

iClusterPlus.Rcheck/tests_x64/runTests.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("iClusterPlus")


RUNIT TEST PROTOCOL -- Tue Apr 12 21:22:51 2022 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
iClusterPlus RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> 
> proc.time()
   user  system elapsed 
  80.81    0.21   86.86 

Example timings

iClusterPlus.Rcheck/examples_i386/iClusterPlus-Ex.timings

nameusersystemelapsed
CNregions000
compute.pod000
iCluster3.480.243.72
iCluster20.300.010.31
iClusterBayes000
iClusterPlus000
plotHMBayes000
plotHeatmap000
plotRI000
plotiCluster000
tune.iClusterBayes000
tune.iClusterPlus000
utility000

iClusterPlus.Rcheck/examples_x64/iClusterPlus-Ex.timings

nameusersystemelapsed
CNregions000
compute.pod000
iCluster3.820.234.05
iCluster20.310.020.32
iClusterBayes000
iClusterPlus000
plotHMBayes000
plotHeatmap000
plotRI000
plotiCluster000
tune.iClusterBayes000
tune.iClusterPlus000
utility000