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This page was generated on 2022-01-17 13:05:06 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for fmrs on nebbiolo2


To the developers/maintainers of the fmrs package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fmrs.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 680/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fmrs 1.4.0  (landing page)
Farhad Shokoohi
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/fmrs
git_branch: RELEASE_3_14
git_last_commit: c105d70
git_last_commit_date: 2021-10-26 13:00:45 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: fmrs
Version: 1.4.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL fmrs
StartedAt: 2022-01-16 03:14:22 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 03:14:42 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 20.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL fmrs
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘fmrs’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c fmrs.c -o fmrs.o
fmrs.c: In function ‘minimum’:
fmrs.c:138:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  138 |   for(i = 0; i < ncov1; i++)
      |   ^~~
fmrs.c:142:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  142 |     return(min1);
      |     ^~~~~~
fmrs.c: In function ‘maximum’:
fmrs.c:152:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  152 |   for(i = 0; i < ncov1; i++)
      |   ^~~
fmrs.c:156:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  156 |     return(max1);
      |     ^~~~~~
fmrs.c: In function ‘FMR_Norm_Surv_EM_MLE’:
fmrs.c:457:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  457 |           for(j = 0; j < (ONCOV[k1] + 1); j++)
      |           ^~~
fmrs.c:463:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  463 |             for (i = 0; i < (ONCOV[k1] + 1); i++) {
      |             ^~~
fmrs.c:285:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable]
  285 |     double multX[nsize][NCOV][NCOMP];
      |            ^~~~~
fmrs.c: In function ‘FMR_Norm_Surv_EM_VarSel’:
fmrs.c:883:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  883 |         for(j = 0; j < NCOV; j++)
      |         ^~~
fmrs.c:887:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  887 |           for(i = 0; i < ONCOV[k1]; i++){
      |           ^~~
fmrs.c:915:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  915 |             for(j = 0; j < (ONCOV[k1] + 1); j++)
      |             ^~~
fmrs.c:921:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  921 |               for (i = 0; i < (ONCOV[k1] + 1); i++) {
      |               ^~~
fmrs.c:687:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable]
  687 |     double multX[nsize][NCOV][NCOMP];
      |            ^~~~~
fmrs.c: In function ‘FMR_Norm_Surv_CwTuneParSel’:
fmrs.c:1403:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1403 |           for(j = 0; j < (ONCOV[k1] + 1); j++)
      |           ^~~
fmrs.c:1409:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1409 |             for (i = 0; i < (ONCOV[k1] + 1); i++) {
      |             ^~~
fmrs.c:1218:12: warning: variable ‘new_pi0’ set but not used [-Wunused-but-set-variable]
 1218 |     double new_pi0[NCOMP];
      |            ^~~~~~~
fmrs.c:1211:12: warning: variable ‘new_sigma0’ set but not used [-Wunused-but-set-variable]
 1211 |     double new_sigma0[NCOMP];
      |            ^~~~~~~~~~
fmrs.c:1196:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable]
 1196 |     double multX[nsize][NCOV][NCOMP];
      |            ^~~~~
fmrs.c: In function ‘FMR_Weibl_Surv_EM_MLE’:
fmrs.c:1752:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1752 |             for(j = 0; j < (ONCOV[k1] + 1); j++)
      |             ^~~
fmrs.c:1758:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1758 |               for (i = 0; i < (ONCOV[k1] + 1); i++) {
      |               ^~~
fmrs.c:1547:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable]
 1547 |     double multX[nsize][NCOV][NCOMP];
      |            ^~~~~
fmrs.c: In function ‘FMR_Weibl_Surv_EM_VarSel’:
fmrs.c:2205:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 2205 |           for(j = 0; j < (NCOV + 1); j++)
      |           ^~~
fmrs.c:2212:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 2212 |             for(i = 0; i < (NCOV + 1); i++){
      |             ^~~
fmrs.c:2251:15: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 2251 |               for(j = 0; j < (NCOV + 2); j++)
      |               ^~~
fmrs.c:2257:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 2257 |                 for (i = 0; i < (NCOV + 2); i++) {
      |                 ^~~
fmrs.c:2271:19: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 2271 |                   for(j = 0; j < (NCOV + 1); j++)
      |                   ^~~
fmrs.c:2277:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 2277 |                     sumi5[k1] = 0.0;
      |                     ^~~~~
fmrs.c: In function ‘FMR_Weibl_Surv_CwTuneParSel’:
fmrs.c:2745:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 2745 |           for(j = 0; j < NCOV; j++)
      |           ^~~
fmrs.c:2750:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 2750 |             for(i = 0; i < ONCOV[k1]; i++){
      |             ^~~
fmrs.c:2553:12: warning: variable ‘multX’ set but not used [-Wunused-but-set-variable]
 2553 |     double multX[nsize][NCOV][k1];
      |            ^~~~~
fmrs.c: In function ‘FMR_Norm_Surv_EM_VarSel’:
fmrs.c:748:12: warning: ‘sat_den’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  748 |     double sat_den;
      |            ^~~~~~~
fmrs.c: In function ‘FMR_Weibl_Surv_EM_VarSel’:
fmrs.c:2072:12: warning: ‘sat_den’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2072 |     double sat_den;
      |            ^~~~~~~
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c fmrs_init.c -o fmrs_init.o
gcc -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o fmrs.so fmrs.o fmrs_init.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-fmrs/00new/fmrs/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fmrs)