Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:34 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for flowViz on tokay2


To the developers/maintainers of the flowViz package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowViz.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 676/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowViz 1.58.0  (landing page)
Mike Jiang , Jake Wagner
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/flowViz
git_branch: RELEASE_3_14
git_last_commit: c9fba2a
git_last_commit_date: 2021-10-26 11:50:34 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: flowViz
Version: 1.58.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/flowViz_1.58.0.tar.gz && rm -rf flowViz.buildbin-libdir && mkdir flowViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowViz.buildbin-libdir flowViz_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL flowViz_1.58.0.zip && rm flowViz_1.58.0.tar.gz flowViz_1.58.0.zip
StartedAt: 2022-04-12 04:40:40 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:43:17 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 156.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/flowViz_1.58.0.tar.gz && rm -rf flowViz.buildbin-libdir && mkdir flowViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowViz.buildbin-libdir flowViz_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL flowViz_1.58.0.zip && rm flowViz_1.58.0.tar.gz flowViz_1.58.0.zip
###
##############################################################################
##############################################################################


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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
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100  806k  100  806k    0     0   642k      0  0:00:01  0:00:01 --:--:--  643k

install for i386

* installing *source* package 'flowViz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'densityplot' with signature 'x="formula",data="view"': no definition for class "view"
in method for 'densityplot' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'densityplot' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
in method for 'histogram' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'histogram' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
in method for 'glines' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'glines' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'glines' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'glpoints' with signature 'x="norm2Filter",data="flowFrame",channels="character"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'gpoints' with signature 'x="norm2Filter",data="flowFrame",channels="character"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'xyplot' with signature 'x="formula",data="view"': no definition for class "view"
in method for 'xyplot' with signature 'x="view",data="missing"': no definition for class "view"
in method for 'xyplot' with signature 'x="formula",data="gateView"': no definition for class "gateView"
in method for 'xyplot' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'xyplot' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
** help
*** installing help indices
  converting help for package 'flowViz'
    finding HTML links ... done
    addName-methods                         html  
    contour-methods                         html  
    densityplot                             html  
    dot-process_flowFrame_overlay           html  
    dot-process_overlay_flowSet             html  
    ecdfplot                                html  
    flowPlot                                html  
    flowViz-package                         html  
    flowViz.par.get                         html  
    glines-methods                          html  
    glpoints-methods                        html  
    glpolygon-methods                       html  
    gpoints-methods                         html  
    gpolygon-methods                        html  
    lattice-methods                         html  
    plot                                    html  
    splom                                   html  
    timeLinePlot                            html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/flowViz.buildbin-libdir/00LOCK-flowViz/00new/flowViz/help/timelineplot.html
    xyplot                                  html  
** building package indices
** installing vignettes
   'filters.Rmd' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowViz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowViz' as flowViz_1.58.0.zip
* DONE (flowViz)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'flowViz' successfully unpacked and MD5 sums checked