Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:32 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for fedup on tokay2


To the developers/maintainers of the fedup package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fedup.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 635/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fedup 1.2.0  (landing page)
Catherine Ross
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/fedup
git_branch: RELEASE_3_14
git_last_commit: c13bb2e
git_last_commit_date: 2021-10-26 13:08:07 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: fedup
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fedup_1.2.0.tar.gz && rm -rf fedup.buildbin-libdir && mkdir fedup.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fedup.buildbin-libdir fedup_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fedup_1.2.0.zip && rm fedup_1.2.0.tar.gz fedup_1.2.0.zip
StartedAt: 2022-04-12 05:26:45 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:28:18 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 93.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fedup_1.2.0.tar.gz && rm -rf fedup.buildbin-libdir && mkdir fedup.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fedup.buildbin-libdir fedup_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fedup_1.2.0.zip && rm fedup_1.2.0.tar.gz fedup_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 22 2988k   22  674k    0     0   646k      0  0:00:04  0:00:01  0:00:03  646k
 74 2988k   74 2221k    0     0  1087k      0  0:00:02  0:00:02 --:--:-- 1087k
100 2988k  100 2988k    0     0  1256k      0  0:00:02  0:00:02 --:--:-- 1256k

install for i386

* installing *source* package 'fedup' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fedup'
    finding HTML links ... done
    geneDouble                              html  
    geneMulti                               html  
    geneSingle                              html  
    pathwaysGMT                             html  
    pathwaysTXT                             html  
    pathwaysXLSX                            html  
    plotDotPlot                             html  
    plotFemap                               html  
    prepInput                               html  
    readPathways                            html  
    runFedup                                html  
    writeFemap                              html  
    writePathways                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fedup' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fedup' as fedup_1.2.0.zip
* DONE (fedup)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'fedup' successfully unpacked and MD5 sums checked