Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-14 13:06:22 -0500 (Fri, 14 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4327
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4076
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for fCI on tokay2


To the developers/maintainers of the fCI package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fCI.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 630/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fCI 1.24.0  (landing page)
Shaojun Tang
Snapshot Date: 2022-01-13 01:55:04 -0500 (Thu, 13 Jan 2022)
git_url: https://git.bioconductor.org/packages/fCI
git_branch: RELEASE_3_14
git_last_commit: 1dbe6dd
git_last_commit_date: 2021-10-26 12:21:13 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: fCI
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fCI_1.24.0.tar.gz && rm -rf fCI.buildbin-libdir && mkdir fCI.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fCI.buildbin-libdir fCI_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fCI_1.24.0.zip && rm fCI_1.24.0.tar.gz fCI_1.24.0.zip
StartedAt: 2022-01-13 05:18:58 -0500 (Thu, 13 Jan 2022)
EndedAt: 2022-01-13 05:21:55 -0500 (Thu, 13 Jan 2022)
EllapsedTime: 177.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fCI_1.24.0.tar.gz && rm -rf fCI.buildbin-libdir && mkdir fCI.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fCI.buildbin-libdir fCI_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fCI_1.24.0.zip && rm fCI_1.24.0.tar.gz fCI_1.24.0.zip
###
##############################################################################
##############################################################################


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 77  884k   77  685k    0     0  2427k      0 --:--:-- --:--:-- --:--:-- 2430k
100  884k  100  884k    0     0  2854k      0 --:--:-- --:--:-- --:--:-- 2853k

install for i386

* installing *source* package 'fCI' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'initialize' with signature '"NPCI"': no definition for class "NPCI"
in method for 'normalization' with signature '"NPCI"': no definition for class "NPCI"
in method for 'setfCI' with signature '"NPCI"': no definition for class "NPCI"
in method for 'populate' with signature '"NPCI"': no definition for class "NPCI"
in method for 'find.fci.targets' with signature '"NPCI"': no definition for class "NPCI"
in method for 'show.targets' with signature '"NPCI"': no definition for class "NPCI"
in method for 'call.npci' with signature '"NPCI"': no definition for class "NPCI"
in method for 'compute' with signature '"NPCI"': no definition for class "NPCI"
** help
*** installing help indices
  converting help for package 'fCI'
    finding HTML links ... done
    NPCI-class                              html  
    call.npci-methods                       html  
    call.npci                               html  
    compute-methods                         html  
    compute                                 html  
    deg.pairwise.fold.change                html  
    deg.up.down.info                        html  
    deseq.median.ratio.normalization        html  
    divergence.multivariate.distributions   html  
    fCI-class                               html  
    fCI.call.by.index                       html  
    fci.data                                html  
    figures-methods                         html  
    figures                                 html  
    find.fci.targets-methods                html  
    find.fci.targets                        html  
    find.mid.point                          html  
    get.fold.large.step                     html  
    get.npci.data                           html  
    get.npci.distance.matrix                html  
    get.outline.index                       html  
    get.protein.fold.step                   html  
    get.rank.combinations                   html  
    get.rna.fold.step                       html  
    initialize-methods                      html  
    intersect.of.lists                      html  
    is.installed                            html  
    multi.dimensional.fci.data              html  
    normalization-methods                   html  
    normalization                           html  
    npci.gene.by.pvalues                    html  
    npci.index.reconsidered                 html  
    npci.index.to.be.removed                html  
    npci.venn.diagram                       html  
    pairwise.change.occupancy               html  
    populate-methods                        html  
    populate                                html  
    report.target.summary                   html  
    setfCI-methods                          html  
    setfCI                                  html  
    show.targets-methods                    html  
    show.targets                            html  
    summarize-methods                       html  
    summarize                               html  
    total.library.size.normalization        html  
    trim.size.normalization                 html  
    two.sample.log.ratio                    html  
    two.sample.permutation.test             html  
    venndiagram-methods                     html  
    venndiagram                             html  
** building package indices
** installing vignettes
   'fCI.Rmd' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fCI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fCI' as fCI_1.24.0.zip
* DONE (fCI)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'fCI' successfully unpacked and MD5 sums checked