Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:29 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for easyreporting on tokay2


To the developers/maintainers of the easyreporting package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/easyreporting.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 555/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyreporting 1.6.0  (landing page)
Dario Righelli
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/easyreporting
git_branch: RELEASE_3_14
git_last_commit: 149f550
git_last_commit_date: 2021-10-26 12:56:43 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: easyreporting
Version: 1.6.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:easyreporting.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings easyreporting_1.6.0.tar.gz
StartedAt: 2022-04-12 18:58:29 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 19:00:20 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 111.0 seconds
RetCode: 0
Status:   OK  
CheckDir: easyreporting.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:easyreporting.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings easyreporting_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/easyreporting.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'easyreporting/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'easyreporting' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'easyreporting' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Unknown package 'link' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/easyreporting.Rcheck/00check.log'
for details.



Installation output

easyreporting.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/easyreporting_1.6.0.tar.gz && rm -rf easyreporting.buildbin-libdir && mkdir easyreporting.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=easyreporting.buildbin-libdir easyreporting_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL easyreporting_1.6.0.zip && rm easyreporting_1.6.0.tar.gz easyreporting_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 30 2579k   30  788k    0     0  1356k      0  0:00:01 --:--:--  0:00:01 1356k
100 2579k  100 2579k    0     0  1948k      0  0:00:01  0:00:01 --:--:-- 1949k

install for i386

* installing *source* package 'easyreporting' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'easyreporting'
    finding HTML links ... done
    addResource-easyreporting-method        html  
    addResource                             html  
    compile-easyreporting-method            html  
    compile                                 html  
    easyreporting-class                     html  
    erGUIVolcano                            html  
    getBibliography-easyreporting-method    html  
    getBibliography                         html  
    getOptionsList-easyreporting-method     html  
    getOptionsList                          html  
    getReportFilename-easyreporting-method
                                            html  
    getReportFilename                       html  
    initReportFilename-easyreporting-method
                                            html  
    initReportFilename                      html  
    makeOptionsList                         html  
    mkdCodeChunkCommented-easyreporting-method
                                            html  
    mkdCodeChunkCommented                   html  
    mkdCodeChunkComplete-easyreporting-method
                                            html  
    mkdCodeChunkComplete                    html  
    mkdCodeChunkEnd-easyreporting-method    html  
    mkdCodeChunkEnd                         html  
    mkdCodeChunkSt-easyreporting-method     html  
    mkdCodeChunkSt                          html  
    mkdCodeChunkTitledCommented-easyreporting-method
                                            html  
    mkdCodeChunkTitledCommented             html  
    mkdGeneralMsg-easyreporting-method      html  
    mkdGeneralMsg                           html  
    mkdGeneralTitledMsg-easyreporting-method
                                            html  
    mkdGeneralTitledMsg                     html  
    mkdSetGlobalOpts-easyreporting-method   html  
    mkdSetGlobalOpts                        html  
    mkdSourceFiles-easyreporting-method     html  
    mkdSourceFiles                          html  
    mkdTitle-easyreporting-method           html  
    mkdTitle                                html  
    mkdVariableAssignment-easyreporting-method
                                            html  
    mkdVariableAssignment                   html  
    setBibliography-easyreporting-method    html  
    setBibliography                         html  
    setOptionsList-easyreporting-method     html  
    setOptionsList                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'easyreporting' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'easyreporting' as easyreporting_1.6.0.zip
* DONE (easyreporting)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'easyreporting' successfully unpacked and MD5 sums checked

Tests output


Example timings

easyreporting.Rcheck/examples_i386/easyreporting-Ex.timings

nameusersystemelapsed
addResource-easyreporting-method0.010.000.03
addResource0.050.000.04
compile-easyreporting-method000
compile000
easyreporting-class0.000.020.02
erGUIVolcano000
getBibliography-easyreporting-method0.040.000.03
getBibliography000
getOptionsList-easyreporting-method000
getOptionsList000
getReportFilename-easyreporting-method000
getReportFilename000
makeOptionsList000
mkdCodeChunkCommented-easyreporting-method000
mkdCodeChunkCommented000
mkdCodeChunkComplete-easyreporting-method000
mkdCodeChunkComplete000
mkdCodeChunkEnd-easyreporting-method000
mkdCodeChunkEnd000
mkdCodeChunkSt-easyreporting-method000
mkdCodeChunkSt000
mkdCodeChunkTitledCommented-easyreporting-method000
mkdCodeChunkTitledCommented000
mkdGeneralMsg-easyreporting-method000
mkdGeneralMsg000
mkdGeneralTitledMsg-easyreporting-method000
mkdGeneralTitledMsg000
mkdTitle-easyreporting-method000
mkdTitle000
mkdVariableAssignment-easyreporting-method000
mkdVariableAssignment000
setBibliography-easyreporting-method000
setBibliography000
setOptionsList-easyreporting-method000
setOptionsList000

easyreporting.Rcheck/examples_x64/easyreporting-Ex.timings

nameusersystemelapsed
addResource-easyreporting-method000
addResource0.040.000.04
compile-easyreporting-method000
compile000
easyreporting-class0.020.000.02
erGUIVolcano000
getBibliography-easyreporting-method0.010.000.02
getBibliography000
getOptionsList-easyreporting-method000
getOptionsList000
getReportFilename-easyreporting-method000
getReportFilename000
makeOptionsList000
mkdCodeChunkCommented-easyreporting-method000
mkdCodeChunkCommented000
mkdCodeChunkComplete-easyreporting-method000
mkdCodeChunkComplete000
mkdCodeChunkEnd-easyreporting-method000
mkdCodeChunkEnd000
mkdCodeChunkSt-easyreporting-method000
mkdCodeChunkSt000
mkdCodeChunkTitledCommented-easyreporting-method000
mkdCodeChunkTitledCommented000
mkdGeneralMsg-easyreporting-method000
mkdGeneralMsg000
mkdGeneralTitledMsg-easyreporting-method000
mkdGeneralTitledMsg000
mkdTitle-easyreporting-method000
mkdTitle000
mkdVariableAssignment-easyreporting-method000
mkdVariableAssignment000
setBibliography-easyreporting-method000
setBibliography000
setOptionsList-easyreporting-method000
setOptionsList000