| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:23 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the cosmosR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cosmosR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 406/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cosmosR 1.2.0 (landing page) Katharina Zirngibl
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cosmosR |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cosmosR_1.2.0.tar.gz && rm -rf cosmosR.buildbin-libdir && mkdir cosmosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cosmosR.buildbin-libdir cosmosR_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cosmosR_1.2.0.zip && rm cosmosR_1.2.0.tar.gz cosmosR_1.2.0.zip |
| StartedAt: 2022-04-12 07:27:17 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:28:08 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 50.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cosmosR_1.2.0.tar.gz && rm -rf cosmosR.buildbin-libdir && mkdir cosmosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cosmosR.buildbin-libdir cosmosR_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cosmosR_1.2.0.zip && rm cosmosR_1.2.0.tar.gz cosmosR_1.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
12 3836k 12 478k 0 0 1261k 0 0:00:03 --:--:-- 0:00:03 1262k
82 3836k 82 3167k 0 0 2296k 0 0:00:01 0:00:01 --:--:-- 2297k
100 3836k 100 3836k 0 0 2445k 0 0:00:01 0:00:01 --:--:-- 2446k
install for i386
* installing *source* package 'cosmosR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cosmosR'
finding HTML links ... done
convert_ensembl_to_entrezid html
convert_genesymbols_to_entrezid html
cosmos_data html
default_CARNIVAL_options html
display_node_neighboorhood html
extract_nodes_for_ORA html
format_COSMOS_res html
gmt_to_dataframe html
load_tf_regulon_dorothea html
load_tf_regulon_dorothea_omnipath html
meta_network html
metabolite_to_pubchem html
omnipath_ptm html
prepare_metabolomics_data html
preprocess_COSMOS_metabolism_to_signaling
html
preprocess_COSMOS_signaling_to_metabolism
html
print.cosmos_data html
run_COSMOS_metabolism_to_signaling html
run_COSMOS_signaling_to_metabolism html
toy_RNA html
toy_metabolic_input html
toy_network html
toy_signaling_input html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cosmosR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cosmosR' as cosmosR_1.2.0.zip
* DONE (cosmosR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'cosmosR' successfully unpacked and MD5 sums checked