Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:21 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for cmapR on tokay2


To the developers/maintainers of the cmapR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cmapR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 346/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cmapR 1.6.0  (landing page)
Ted Natoli
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/cmapR
git_branch: RELEASE_3_14
git_last_commit: a9d9f50
git_last_commit_date: 2021-10-26 12:58:05 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cmapR
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cmapR_1.6.0.tar.gz && rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cmapR_1.6.0.zip && rm cmapR_1.6.0.tar.gz cmapR_1.6.0.zip
StartedAt: 2022-04-12 05:45:22 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:46:38 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 76.1 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cmapR_1.6.0.tar.gz && rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cmapR_1.6.0.zip && rm cmapR_1.6.0.tar.gz cmapR_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 11 3557k   11  403k    0     0   827k      0  0:00:04 --:--:--  0:00:04  828k
 59 3557k   59 2103k    0     0  1414k      0  0:00:02  0:00:01  0:00:01 1413k
100 3557k  100 3557k    0     0  1708k      0  0:00:02  0:00:02 --:--:-- 1709k

install for i386

* installing *source* package 'cmapR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cmapR'
    finding HTML links ... done
    GCT-class                               html  
    GCT                                     html  
    align_matrices                          html  
    annotate_gct                            html  
    append_dim                              html  
    cdesc_char                              html  
    check_colnames                          html  
    check_dups                              html  
    distil                                  html  
    ds                                      html  
    extract_gct                             html  
    fix_datatypes                           html  
    gene_set                                html  
    ids                                     html  
    is.wholenumber                          html  
    kd_gct                                  html  
    lxb2mat                                 html  
    mat                                     html  
    melt_gct                                html  
    finding level-2 HTML links ... done

    merge_gct                               html  
    merge_with_precedence                   html  
    meta                                    html  
    na_pad_matrix                           html  
    parse_gctx                              html  
    parse_gmt                               html  
    parse_gmx                               html  
    parse_grp                               html  
    process_ids                             html  
    rank_gct                                html  
    read_gctx_ids                           html  
    read_gctx_meta                          html  
    robust_zscore                           html  
    subset_gct                              html  
    subset_to_ids                           html  
    threshold                               html  
    transpose_gct                           html  
    update_gctx                             html  
    write_gct                               html  
    write_gctx                              html  
    write_gctx_meta                         html  
    write_gmt                               html  
    write_grp                               html  
    write_tbl                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cmapR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cmapR' as cmapR_1.6.0.zip
* DONE (cmapR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'cmapR' successfully unpacked and MD5 sums checked