Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:18 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for cellTree on tokay2


To the developers/maintainers of the cellTree package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cellTree.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 276/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cellTree 1.24.0  (landing page)
David duVerle
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/cellTree
git_branch: RELEASE_3_14
git_last_commit: 2a079ea
git_last_commit_date: 2021-10-26 12:24:44 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cellTree
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cellTree_1.24.0.tar.gz && rm -rf cellTree.buildbin-libdir && mkdir cellTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellTree.buildbin-libdir cellTree_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cellTree_1.24.0.zip && rm cellTree_1.24.0.tar.gz cellTree_1.24.0.zip
StartedAt: 2022-04-12 05:13:14 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:14:26 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 71.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cellTree_1.24.0.tar.gz && rm -rf cellTree.buildbin-libdir && mkdir cellTree.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellTree.buildbin-libdir cellTree_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cellTree_1.24.0.zip && rm cellTree_1.24.0.tar.gz cellTree_1.24.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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 46  499k   46  230k    0     0   760k      0 --:--:-- --:--:-- --:--:--  760k
100  499k  100  499k    0     0   604k      0 --:--:-- --:--:-- --:--:--  604k

install for i386

* installing *source* package 'cellTree' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** help
*** installing help indices
  converting help for package 'cellTree'
    finding HTML links ... done
    HSMM_lda_model                          html  
    cell.ordering.table                     html  
    cellTree-package                        html  
    compute.backbone.tree                   html  
    compute.go.enrichment                   html  
    compute.lda                             html  
    ct.plot.go.dag                          html  
    ct.plot.grouping                        html  
    ct.plot.heatmap                         html  
    ct.plot.topics                          html  
    get.cell.dists                          html  
    go.results.to.latex                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cellTree' ...
** testing if installed package can be loaded

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'cellTree' as cellTree_1.24.0.zip
* DONE (cellTree)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'cellTree' successfully unpacked and MD5 sums checked