Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:05:10 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for ceRNAnetsim on nebbiolo2


To the developers/maintainers of the ceRNAnetsim package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ceRNAnetsim.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 280/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ceRNAnetsim 1.6.99  (landing page)
Selcen Ari Yuka
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/ceRNAnetsim
git_branch: RELEASE_3_14
git_last_commit: 0d0d7ac
git_last_commit_date: 2022-03-03 03:35:25 -0400 (Thu, 03 Mar 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ceRNAnetsim
Version: 1.6.99
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ceRNAnetsim.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ceRNAnetsim_1.6.99.tar.gz
StartedAt: 2022-04-12 06:45:10 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:46:51 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 101.2 seconds
RetCode: 0
Status:   OK  
CheckDir: ceRNAnetsim.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ceRNAnetsim.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ceRNAnetsim_1.6.99.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/ceRNAnetsim.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ceRNAnetsim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ceRNAnetsim’ version ‘1.6.99’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ceRNAnetsim’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
find_node_perturbation 12.326  0.111  12.437
simulate_vis            5.431  0.035   5.467
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

ceRNAnetsim.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ceRNAnetsim
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘ceRNAnetsim’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ceRNAnetsim)

Tests output

ceRNAnetsim.Rcheck/tests/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ceRNAnetsim)
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: tidygraph

Attaching package: 'tidygraph'

The following object is masked from 'package:testthat':

    matches

The following object is masked from 'package:stats':

    filter


Attaching package: 'ceRNAnetsim'

The following object is masked from 'package:stats':

    simulate

> 
> 
> test_check("ceRNAnetsim")
[ FAIL 0 | WARN 35 | SKIP 0 | PASS 30 ]

[ FAIL 0 | WARN 35 | SKIP 0 | PASS 30 ]
> 
> proc.time()
   user  system elapsed 
 27.788   0.415  28.189 

Example timings

ceRNAnetsim.Rcheck/ceRNAnetsim-Ex.timings

nameusersystemelapsed
calc_perturbation1.3430.0281.371
find_iteration1.3410.0001.340
find_node_perturbation12.326 0.11112.437
priming_graph0.5770.0120.588
simulate1.0820.0001.081
simulate_vis5.4310.0355.467
update_how1.0610.0081.070
update_nodes0.3410.0000.341
update_variables0.3350.0000.335
vis_graph1.0140.0001.014