Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-19 13:06:15 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for bioassayR on tokay2


To the developers/maintainers of the bioassayR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bioassayR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 151/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bioassayR 1.32.1  (landing page)
Daniela Cassol
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/bioassayR
git_branch: RELEASE_3_14
git_last_commit: 05a9464
git_last_commit_date: 2021-12-04 14:55:17 -0500 (Sat, 04 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: bioassayR
Version: 1.32.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/bioassayR_1.32.1.tar.gz && rm -rf bioassayR.buildbin-libdir && mkdir bioassayR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bioassayR.buildbin-libdir bioassayR_1.32.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL bioassayR_1.32.1.zip && rm bioassayR_1.32.1.tar.gz bioassayR_1.32.1.zip
StartedAt: 2022-01-18 04:59:36 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 05:01:13 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 97.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/bioassayR_1.32.1.tar.gz && rm -rf bioassayR.buildbin-libdir && mkdir bioassayR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bioassayR.buildbin-libdir bioassayR_1.32.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL bioassayR_1.32.1.zip && rm bioassayR_1.32.1.tar.gz bioassayR_1.32.1.zip
###
##############################################################################
##############################################################################


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  3  305k    3 12177    0     0   195k      0  0:00:01 --:--:--  0:00:01  194k
100  305k  100  305k    0     0  1654k      0 --:--:-- --:--:-- --:--:-- 1652k

install for i386

* installing *source* package 'bioassayR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'organism' in package 'bioassayR'
Creating a new generic function for 'organism<-' in package 'bioassayR'
** help
*** installing help indices
  converting help for package 'bioassayR'
    finding HTML links ... done
    BioAssayDB-class                        html  
    activeAgainst                           html  
    activeTargets                           html  
    addBioassayIndex                        html  
    addDataSource                           html  
    allCids                                 html  
    allTargets                              html  
    assaySetTargets                         html  
    bioactivityFingerprint                  html  
    bioassay-class                          html  
    bioassaySet-class                       html  
    connectBioassayDB                       html  
    crossReactivityProbability              html  
    disconnectBioassayDB                    html  
    dropBioassay                            html  
    dropBioassayIndex                       html  
    getAssay                                html  
    getAssays                               html  
    getBioassaySetByCids                    html  
    inactiveTargets                         html  
    loadBioassay                            html  
    loadIdMapping                           html  
    newBioassayDB                           html  
    parsePubChemBioassay                    html  
    perTargetMatrix                         html  
    queryBioassayDB                         html  
    samplebioassay                          html  
    scaleBioassaySet                        html  
    screenedAtLeast                         html  
    selectiveAgainst                        html  
    targetSelectivity                       html  
    translateTargetId                       html  
    trinarySimilarity                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bioassayR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bioassayR' as bioassayR_1.32.1.zip
* DONE (bioassayR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'bioassayR' successfully unpacked and MD5 sums checked