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This page was generated on 2022-01-19 13:06:12 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for aroma.light on tokay2


To the developers/maintainers of the aroma.light package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/aroma.light.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 77/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
aroma.light 3.24.0  (landing page)
Henrik Bengtsson
Snapshot Date: 2022-01-18 01:55:07 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/aroma.light
git_branch: RELEASE_3_14
git_last_commit: 3ff48b8
git_last_commit_date: 2021-10-27 14:51:00 -0500 (Wed, 27 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: aroma.light
Version: 3.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/aroma.light_3.24.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.24.0.zip && rm aroma.light_3.24.0.tar.gz aroma.light_3.24.0.zip
StartedAt: 2022-01-18 04:44:52 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 04:46:38 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 105.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/aroma.light_3.24.0.tar.gz && rm -rf aroma.light.buildbin-libdir && mkdir aroma.light.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aroma.light.buildbin-libdir aroma.light_3.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL aroma.light_3.24.0.zip && rm aroma.light_3.24.0.tar.gz aroma.light_3.24.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  409k  100  409k    0     0  1948k      0 --:--:-- --:--:-- --:--:-- 1957k

install for i386

* installing *source* package 'aroma.light' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'aroma.light'
    finding HTML links ... done
    1._Calibration_and_Normalization        html  
    Non-documented_objects                  html  
    aroma.light-package                     html  
    averageQuantile                         html  
    backtransformAffine                     html  
    backtransformPrincipalCurve             html  
    calibrateMultiscan                      html  
    callNaiveGenotypes                      html  
    distanceBetweenLines                    html  
    findPeaksAndValleys                     html  
    fitIWPCA                                html  
    fitNaiveGenotypes                       html  
    fitPrincipalCurve                       html  
    fitXYCurve                              html  
    iwpca                                   html  
    likelihood.smooth.spline                html  
    medianPolish                            html  
    normalizeAffine                         html  
    normalizeAverage                        html  
    normalizeCurveFit                       html  
    normalizeDifferencesToAverage           html  
    normalizeFragmentLength                 html  
    normalizeQuantileRank                   html  
    normalizeQuantileRank.matrix            html  
    normalizeQuantileSpline                 html  
    normalizeTumorBoost                     html  
    pairedAlleleSpecificCopyNumbers         html  
    plotDensity                             html  
    plotMvsA                                html  
    plotMvsAPairs                           html  
    plotMvsMPairs                           html  
    plotXYCurve                             html  
    print.SmoothSplineLikelihood            html  
    robustSmoothSpline                      html  
    sampleCorrelations                      html  
    sampleTuples                            html  
    wpca                                    html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'aroma.light' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aroma.light' as aroma.light_3.24.0.zip
* DONE (aroma.light)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'aroma.light' successfully unpacked and MD5 sums checked