Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:32 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for VarCon on tokay2


To the developers/maintainers of the VarCon package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VarCon.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2036/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VarCon 1.2.0  (landing page)
Johannes Ptok
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/VarCon
git_branch: RELEASE_3_14
git_last_commit: 1853e9f
git_last_commit_date: 2021-10-26 13:05:15 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: VarCon
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/VarCon_1.2.0.tar.gz && rm -rf VarCon.buildbin-libdir && mkdir VarCon.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VarCon.buildbin-libdir VarCon_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL VarCon_1.2.0.zip && rm VarCon_1.2.0.tar.gz VarCon_1.2.0.zip
StartedAt: 2022-04-12 06:10:47 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:12:13 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 86.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/VarCon_1.2.0.tar.gz && rm -rf VarCon.buildbin-libdir && mkdir VarCon.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VarCon.buildbin-libdir VarCon_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL VarCon_1.2.0.zip && rm VarCon_1.2.0.tar.gz VarCon_1.2.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 18 1753k   18  318k    0     0   703k      0  0:00:02 --:--:--  0:00:02  703k
100 1753k  100 1753k    0     0  1190k      0  0:00:01  0:00:01 --:--:-- 1190k
100 1753k  100 1753k    0     0  1190k      0  0:00:01  0:00:01 --:--:-- 1190k

install for i386

* installing *source* package 'VarCon' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'VarCon'
    finding HTML links ... done
    calculateHZEIperNT                      html  
    calculateMaxEntScanScore                html  
    gene2transcript                         html  
    generateHEXplorerPlot                   html  
    getMaxEntInfo                           html  
    getSeqInfoFromVariation                 html  
    hbg                                     html  
    hex                                     html  
    prepareReferenceFasta                   html  
    referenceDnaStringSet                   html  
    startVarConApp                          html  
    transCoord                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'VarCon' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'VarCon' as VarCon_1.2.0.zip
* DONE (VarCon)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'VarCon' successfully unpacked and MD5 sums checked