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This page was generated on 2022-04-13 12:07:32 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for UMI4Cats on tokay2


To the developers/maintainers of the UMI4Cats package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/UMI4Cats.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2026/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UMI4Cats 1.4.0  (landing page)
Mireia Ramos-Rodriguez
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/UMI4Cats
git_branch: RELEASE_3_14
git_last_commit: b355dcd
git_last_commit_date: 2021-10-26 13:01:42 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: UMI4Cats
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/UMI4Cats_1.4.0.tar.gz && rm -rf UMI4Cats.buildbin-libdir && mkdir UMI4Cats.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=UMI4Cats.buildbin-libdir UMI4Cats_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL UMI4Cats_1.4.0.zip && rm UMI4Cats_1.4.0.tar.gz UMI4Cats_1.4.0.zip
StartedAt: 2022-04-12 07:28:09 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:30:19 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 130.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/UMI4Cats_1.4.0.tar.gz && rm -rf UMI4Cats.buildbin-libdir && mkdir UMI4Cats.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=UMI4Cats.buildbin-libdir UMI4Cats_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL UMI4Cats_1.4.0.zip && rm UMI4Cats_1.4.0.tar.gz UMI4Cats_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2320k  100 2320k    0     0  2802k      0 --:--:-- --:--:-- --:--:-- 2805k

install for i386

* installing *source* package 'UMI4Cats' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'UMI4Cats'
    finding HTML links ... done
    UMI4C-methods                           html  
    finding level-2 HTML links ... done

    UMI4C                                   html  
    UMI4C2dds                               html  
    UMI4Cats                                html  
    addGrouping                             html  
    addStepping                             html  
    alignmentUMI4C                          html  
    calculateAdaptativeTrend                html  
    calculateDomainogram                    html  
    callInteractions                        html  
    combineUMI4C                            html  
    contactsUMI4C                           html  
    counterUMI4C                            html  
    createGeneAnnotation                    html  
    createStatsTable                        html  
    darken                                  html  
    dds2UMI4C                               html  
    demultiplexFastq                        html  
    differentialNbinomWaldTestUMI4C         html  
    digestGenome                            html  
    dot-getCache                            html  
    dot-getSummaryBam                       html  
    dot-singleAlignmentUMI4C                html  
    dot-singleCounterUMI4C                  html  
    dot-singlePrepUMI4C                     html  
    dot-singleSplitUMI4C                    html  
    dot-smoothMonotone                      html  
    downloadUMI4CexampleData                html  
    ex_ciita_umi4c                          html  
    fisherUMI4C                             html  
    formatPlotsUMI4C                        html  
    geoMeanCoordinates                      html  
    getColors                               html  
    getFactors                              html  
    getNormalizationMatrix                  html  
    getSignInteractions                     html  
    getViewpointCoordinates                 html  
    groupSamplesUMI4C                       html  
    makeWindowFragments                     html  
    nbinomWaldTestUMI4C                     html  
    pipe                                    html  
    plotDifferential                        html  
    plotDomainogram                         html  
    plotGenes                               html  
    plotInteractions                        html  
    plotInteractionsUMI4C                   html  
    plotTrend                               html  
    plotUMI4C                               html  
    prepUMI4C                               html  
    smoothMonotoneUMI4C                     html  
    splitUMI4C                              html  
    statsUMI4C                              html  
    theme                                   html  
    themeXYblank                            html  
    themeXblank                             html  
    themeYblank                             html  
    vstUMI4C                                html  
    waldUMI4C                               html  
    zscoreUMI4C                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'UMI4Cats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'UMI4Cats' as UMI4Cats_1.4.0.zip
* DONE (UMI4Cats)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'UMI4Cats' successfully unpacked and MD5 sums checked