Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:02 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for TCGAbiolinks on nebbiolo2


To the developers/maintainers of the TCGAbiolinks package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAbiolinks.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1937/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAbiolinks 2.22.6  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/TCGAbiolinks
git_branch: RELEASE_3_14
git_last_commit: 4aebbb00
git_last_commit_date: 2022-04-06 17:23:24 -0400 (Wed, 06 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    ERROR  
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: TCGAbiolinks
Version: 2.22.6
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:TCGAbiolinks.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings TCGAbiolinks_2.22.6.tar.gz
StartedAt: 2022-04-12 09:38:12 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 09:38:22 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 9.3 seconds
RetCode: 1
Status:   ERROR  
CheckDir: TCGAbiolinks.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:TCGAbiolinks.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings TCGAbiolinks_2.22.6.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/TCGAbiolinks.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TCGAbiolinks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TCGAbiolinks’ version ‘2.22.6’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘SeuratDisk’

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.14-bioc/meat/TCGAbiolinks.Rcheck/00check.log’
for details.


Installation output


Tests output


Example timings