Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:25 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for SPONGE on tokay2


To the developers/maintainers of the SPONGE package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPONGE.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1867/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SPONGE 1.16.1  (landing page)
Markus List
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/SPONGE
git_branch: RELEASE_3_14
git_last_commit: 0e56a73
git_last_commit_date: 2022-04-07 03:39:39 -0400 (Thu, 07 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: SPONGE
Version: 1.16.1
Command: rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.16.1.tar.gz
StartedAt: 2022-04-13 07:12:04 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 07:12:33 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 29.3 seconds
RetCode: 0
Status:   OK  
PackageFile: SPONGE_1.16.1.zip
PackageFileSize: 8.323 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.16.1.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'SPONGE' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SPONGE'
    finding HTML links ... done
    ceRNA_interactions                      html  
    check_and_convert_expression_data       html  
    fn_elasticnet                           html  
    fn_gene_miRNA_F_test                    html  
    fn_get_model_coef                       html  
    fn_get_rss                              html  
    fn_get_shared_miRNAs                    html  
    gene_expr                               html  
    genes_pairwise_combinations             html  
    mir_expr                                html  
    mir_interactions                        html  
    mircode_ensg                            html  
    mircode_symbol                          html  
    precomputed_cov_matrices                html  
    precomputed_null_model                  html  
    sample_zero_mscor_cov                   html  
    sample_zero_mscor_data                  html  
    sponge                                  html  
    sponge_build_null_model                 html  
    sponge_compute_p_values                 html  
    sponge_edge_centralities                html  
    sponge_gene_miRNA_interaction_filter    html  
    sponge_network                          html  
    sponge_node_centralities                html  
    sponge_plot_network                     html  
    sponge_plot_network_centralities        html  
    sponge_plot_simulation_results          html  
    sponge_run_benchmark                    html  
    sponge_subsampling                      html  
    targetscan_ensg                         html  
    targetscan_symbol                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SPONGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SPONGE' as SPONGE_1.16.1.zip
* DONE (SPONGE)