Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:05:50 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RedeR on nebbiolo2


To the developers/maintainers of the RedeR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RedeR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1569/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RedeR 1.42.0  (landing page)
Mauro Castro
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/RedeR
git_branch: RELEASE_3_14
git_last_commit: 1bd8c6a
git_last_commit_date: 2021-10-26 11:59:43 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RedeR
Version: 1.42.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings RedeR_1.42.0.tar.gz
StartedAt: 2022-04-12 08:59:11 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 08:59:46 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 35.3 seconds
RetCode: 0
Status:   OK  
CheckDir: RedeR.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings RedeR_1.42.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/RedeR.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.14-bioc/meat/RedeR.Rcheck/00check.log’
for details.



Installation output

RedeR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL RedeR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘RedeR’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RedeR)

Tests output


Example timings

RedeR.Rcheck/RedeR-Ex.timings

nameusersystemelapsed
RedPort-class0.0030.0000.003
RedPort000
RedeR.data0.3650.0080.373
addEdgeBetweenContainers0.0110.0000.011
addEdges0.0070.0000.007
addGraph0.0060.0000.007
addLegend0.0030.0030.007
addNodes0.0060.0010.007
addSeries0.0140.0000.014
addSubgraph0.0070.0000.007
addSubgraph.list0.0070.0000.007
att0.0330.0000.033
calld0.0010.0000.000
cea0.0180.0000.017
deSelectEdges0.0040.0040.007
deSelectGraph0.0070.0000.007
deSelectNodes0.0060.0000.006
deleteEdges0.0030.0040.007
deleteNodes0.0070.0000.007
deleteSelectedEdges0.0070.0000.007
deleteSelectedNodes0.0080.0000.008
duplicateGraph0.0070.0000.008
exitd0.0010.0000.000
getContainerComponets0.0080.0000.008
getEdgeIDs0.0070.0000.006
getEdges0.0070.0000.007
getGraph0.0070.0000.007
getNodeIDs0.0070.0000.006
getNodes0.0070.0000.007
getSourceEdgeIDs0.0060.0000.006
getTargetEdgeIDs0.0090.0000.010
gtoy.rm000
isDynamicsActive0.0000.0000.001
mergeNodes0.0070.0000.007
mergeOutEdges0.0070.0000.007
nestNodes0.0070.0000.007
nesthc1.0610.0241.085
ping0.0000.0000.001
relax0.010.000.01
resetd0.0000.0000.001
selectAllEdges0.0090.0000.009
selectAllNodes0.0090.0000.009
selectEdges0.0050.0030.009
selectGraph0.0040.0040.009
selectNodes0.0090.0000.008
setArrowDirection0.0080.0000.008
subg0.0310.0120.043
updateContainerSize0.0110.0000.011
updateGraph0.0040.0040.008
version0.0000.0000.001