##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RLassoCox.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RLassoCox_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/RLassoCox.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RLassoCox/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RLassoCox' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RLassoCox' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
RLassoCox-package   51.88  27.18   79.10
predict.RLassoCox   23.94  21.70   45.64
predict.cvRLassoCox 29.61  14.42   44.03
cvRLassoCox         27.32  10.90   38.25
RLassoCox           22.56   8.32   30.87
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
RLassoCox-package   48.31  16.15   64.56
predict.cvRLassoCox 24.94   9.58   34.51
cvRLassoCox         23.49   7.38   30.86
predict.RLassoCox   23.21   7.17   30.39
RLassoCox           22.91   7.36   30.26
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RLassoCox_1.2.0.tar.gz && rm -rf RLassoCox.buildbin-libdir && mkdir RLassoCox.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RLassoCox.buildbin-libdir RLassoCox_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RLassoCox_1.2.0.zip && rm RLassoCox_1.2.0.tar.gz RLassoCox_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 36 1709k   36  623k    0     0   614k      0  0:00:02  0:00:01  0:00:01  614k
100 1709k  100 1709k    0     0   973k      0  0:00:01  0:00:01 --:--:--  973k

install for i386

* installing *source* package 'RLassoCox' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RLassoCox'
    finding HTML links ... done
    RLassoCox-package                       html  
    RLassoCox                               html  
    cvRLassoCox                             html  
    dGMMirGraph                             html  
    mRNA_matrix                             html  
    predict.RLassoCox                       html  
    predict.cvRLassoCox                     html  
    rw                                      html  
    survData                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RLassoCox' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RLassoCox' as RLassoCox_1.2.0.zip
* DONE (RLassoCox)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'RLassoCox' successfully unpacked and MD5 sums checked