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This page was generated on 2022-04-13 12:07:11 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RCASPAR on tokay2


To the developers/maintainers of the RCASPAR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCASPAR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1542/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCASPAR 1.40.0  (landing page)
Douaa Mugahid , Lars Kaderali
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/RCASPAR
git_branch: RELEASE_3_14
git_last_commit: 9cf9219
git_last_commit_date: 2021-10-26 11:59:20 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: RCASPAR
Version: 1.40.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCASPAR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RCASPAR_1.40.0.tar.gz
StartedAt: 2022-04-13 01:18:01 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 01:18:45 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 44.0 seconds
RetCode: 0
Status:   OK  
CheckDir: RCASPAR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RCASPAR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RCASPAR_1.40.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/RCASPAR.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RCASPAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RCASPAR' version '1.40.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RCASPAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
kmplt_svrl: no visible global function definition for 'lines'
kmplt_svrl: no visible global function definition for 'legend'
logrnk: no visible global function definition for 'pchisq'
pltprior: no visible global function definition for 'persp'
weights_BLH: no visible global function definition for 'optim'
Undefined global functions or variables:
  legend lines optim pchisq persp
Consider adding
  importFrom("graphics", "legend", "lines", "persp")
  importFrom("stats", "optim", "pchisq")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/RCASPAR.Rcheck/00check.log'
for details.



Installation output

RCASPAR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RCASPAR_1.40.0.tar.gz && rm -rf RCASPAR.buildbin-libdir && mkdir RCASPAR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RCASPAR.buildbin-libdir RCASPAR_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RCASPAR_1.40.0.zip && rm RCASPAR_1.40.0.tar.gz RCASPAR_1.40.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 62075  100 62075    0     0   218k      0 --:--:-- --:--:-- --:--:--  219k

install for i386

* installing *source* package 'RCASPAR' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RCASPAR'
    finding HTML links ... done
    Bergamaschi                             html  
    RCASPAR-package                         html  
    STpredictor_BLH                         html  
    STpredictor_xvBLH                       html  
    deriv_weight_estimator_BLH              html  
    deriv_weight_estimator_BLH_noprior      html  
    kmplt                                   html  
    kmplt_svrl                              html  
    logrnk                                  html  
    pltgamma                                html  
    pltprior                                html  
    simpson                                 html  
    survData                                html  
    survivAURC                              html  
    survivROC                               html  
    trapezoid                               html  
    weight_estimator_BLH                    html  
    weight_estimator_BLH_noprior            html  
    weights_BLH                             html  
    weights_xvBLH                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RCASPAR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RCASPAR' as RCASPAR_1.40.0.zip
* DONE (RCASPAR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'RCASPAR' successfully unpacked and MD5 sums checked

Tests output


Example timings

RCASPAR.Rcheck/examples_i386/RCASPAR-Ex.timings

nameusersystemelapsed
Bergamaschi0.010.000.01
RCASPAR-package0.500.020.51
STpredictor_BLH0.060.020.08
STpredictor_xvBLH0.480.000.48
deriv_weight_estimator_BLH0.020.000.02
deriv_weight_estimator_BLH_noprior0.010.000.01
kmplt000
kmplt_svrl0.020.000.02
logrnk000
pltgamma000
pltprior000
simpson000
survData000
survivAURC0.150.000.15
survivROC0.040.000.04
trapezoid000
weight_estimator_BLH000
weight_estimator_BLH_noprior000
weights_BLH0.020.000.03
weights_xvBLH0.080.000.08

RCASPAR.Rcheck/examples_x64/RCASPAR-Ex.timings

nameusersystemelapsed
Bergamaschi0.030.000.04
RCASPAR-package0.550.030.61
STpredictor_BLH0.060.000.06
STpredictor_xvBLH0.640.020.66
deriv_weight_estimator_BLH0.000.020.02
deriv_weight_estimator_BLH_noprior0.010.000.01
kmplt000
kmplt_svrl000
logrnk0.020.000.02
pltgamma000
pltprior000
simpson000
survData000
survivAURC0.100.000.11
survivROC0.040.000.03
trapezoid000
weight_estimator_BLH000
weight_estimator_BLH_noprior000
weights_BLH0.010.000.01
weights_xvBLH0.030.000.04