Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:08 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for PubScore on tokay2


To the developers/maintainers of the PubScore package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PubScore.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1484/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PubScore 1.6.0  (landing page)
Tiago Lubiana
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/PubScore
git_branch: RELEASE_3_14
git_last_commit: 9794604
git_last_commit_date: 2021-10-26 12:56:26 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: PubScore
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PubScore_1.6.0.tar.gz && rm -rf PubScore.buildbin-libdir && mkdir PubScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PubScore.buildbin-libdir PubScore_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PubScore_1.6.0.zip && rm PubScore_1.6.0.tar.gz PubScore_1.6.0.zip
StartedAt: 2022-04-12 04:59:37 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:01:01 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 83.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PubScore_1.6.0.tar.gz && rm -rf PubScore.buildbin-libdir && mkdir PubScore.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PubScore.buildbin-libdir PubScore_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PubScore_1.6.0.zip && rm PubScore_1.6.0.tar.gz PubScore_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 12 3061k   12  392k    0     0   806k      0  0:00:03 --:--:--  0:00:03  806k
 66 3061k   66 2030k    0     0  1369k      0  0:00:02  0:00:01  0:00:01 1368k
100 3061k  100 3061k    0     0  1571k      0  0:00:01  0:00:01 --:--:-- 1570k

install for i386

* installing *source* package 'PubScore' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PubScore'
    finding HTML links ... done
    PubScore-class                          html  
    all_counts                              html  
    dot-getSimulation_test                  html  
    dot-query_pubmed                        html  
    gene2pubmed_db                          html  
    getScore                                html  
    get_all_counts                          html  
    get_literature_score                    html  
    heatmapViz                              html  
    hgcn_entrez_reference                   html  
    initialize-PubScore-method              html  
    networkViz                              html  
    plot_literature_graph                   html  
    plot_literature_score                   html  
    pubscore                                html  
    set_all_counts                          html  
    test_score                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PubScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PubScore' as PubScore_1.6.0.zip
* DONE (PubScore)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'PubScore' successfully unpacked and MD5 sums checked