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This page was generated on 2022-04-13 12:07:05 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for PhosR on tokay2


To the developers/maintainers of the PhosR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PhosR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1413/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PhosR 1.4.0  (landing page)
Taiyun Kim
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/PhosR
git_branch: RELEASE_3_14
git_last_commit: 4366e01
git_last_commit_date: 2021-10-26 13:03:01 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: PhosR
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PhosR_1.4.0.tar.gz && rm -rf PhosR.buildbin-libdir && mkdir PhosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhosR.buildbin-libdir PhosR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PhosR_1.4.0.zip && rm PhosR_1.4.0.tar.gz PhosR_1.4.0.zip
StartedAt: 2022-04-12 07:23:18 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:24:29 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 71.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PhosR_1.4.0.tar.gz && rm -rf PhosR.buildbin-libdir && mkdir PhosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhosR.buildbin-libdir PhosR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PhosR_1.4.0.zip && rm PhosR_1.4.0.tar.gz PhosR_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 26 6099k   26 1588k    0     0  1642k      0  0:00:03 --:--:--  0:00:03 1642k
 71 6099k   71 4360k    0     0  2180k      0  0:00:02  0:00:01  0:00:01 2180k
100 6099k  100 6099k    0     0  2457k      0  0:00:02  0:00:02 --:--:-- 2458k

install for i386

* installing *source* package 'PhosR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PhosR'
    finding HTML links ... done
    KinaseFamily                            html  
    PhosphoExperiment-methods               html  
    PhosphoExperiment-operate               html  
    finding level-2 HTML links ... done

    PhosphoExperiment                       html  
    PhosphoSite.human                       html  
    PhosphoSite.mouse                       html  
    PhosphoSite.rat                         html  
    RUVphospho                              html  
    SPSs                                    html  
    Signalomes                              html  
    createFrequencyMat                      html  
    frequencyScoring                        html  
    getSPS                                  html  
    hSEGs                                   html  
    kinaseSubstrateHeatmap                  html  
    kinaseSubstratePred                     html  
    kinaseSubstrateProfile                  html  
    kinaseSubstrateScore                    html  
    mIntersect                              html  
    mSEGs                                   html  
    matANOVA                                html  
    meanAbundance                           html  
    medianScaling                           html  
    minmax                                  html  
    motif.human.list                        html  
    motif.mouse.list                        html  
    motif.rat.list                          html  
    pathwayOverrepresent                    html  
    pathwayRankBasedEnrichment              html  
    phosCollapse                            html  
    phospho.L6.ratio                        html  
    phospho.L6.ratio.pe                     html  
    phospho.cells.Ins                       html  
    phospho.liver.Ins.TC.ratio.RUV          html  
    phospho.liver.Ins.TC.ratio.RUV.pe       html  
    plotKinaseNetwork                       html  
    plotQC                                  html  
    plotSignalomeMap                        html  
    ptImpute                                html  
    scImpute                                html  
    selectGrps                              html  
    selectLocalisedSites                    html  
    selectOverallPercent                    html  
    selectTimes                             html  
    siteAnnotate                            html  
    standardise                             html  
    tImpute                                 html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PhosR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PhosR' as PhosR_1.4.0.zip
* DONE (PhosR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'PhosR' successfully unpacked and MD5 sums checked