Alexandre Kuhn
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/PSEA |
| git_branch: RELEASE_3_14 |
| git_last_commit: 677d1d9 |
| git_last_commit_date: 2021-10-26 12:16:10 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:08 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the PSEA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PSEA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1479/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PSEA 1.28.0 (landing page) Alexandre Kuhn
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: PSEA |
| Version: 1.28.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PSEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings PSEA_1.28.0.tar.gz |
| StartedAt: 2022-04-13 00:56:17 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 00:57:10 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 53.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PSEA.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PSEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings PSEA_1.28.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/PSEA.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PSEA/DESCRIPTION' ... OK
* this is package 'PSEA' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PSEA' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
data 5.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
crplot: no visible global function definition for 'residuals'
crplot: no visible global function definition for 'dev.new'
crplot: no visible global function definition for 'abline'
crplot: no visible global function definition for 'points'
lmfitst: no visible global function definition for 'is'
lmfitst : <anonymous>: no visible global function definition for
'lm.fit'
marker: no visible global function definition for 'is'
swlm: no visible global function definition for 'formula'
swlm: no visible global function definition for 'is'
swlm: no visible global function definition for 'lm'
Undefined global functions or variables:
abline dev.new formula is lm lm.fit points residuals
Consider adding
importFrom("grDevices", "dev.new")
importFrom("graphics", "abline", "points")
importFrom("methods", "is")
importFrom("stats", "formula", "lm", "lm.fit", "residuals")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/PSEA.Rcheck/00check.log'
for details.
PSEA.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PSEA_1.28.0.tar.gz && rm -rf PSEA.buildbin-libdir && mkdir PSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PSEA.buildbin-libdir PSEA_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PSEA_1.28.0.zip && rm PSEA_1.28.0.tar.gz PSEA_1.28.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 5847k 2 152k 0 0 448k 0 0:00:13 --:--:-- 0:00:13 447k
21 5847k 21 1265k 0 0 942k 0 0:00:06 0:00:01 0:00:05 942k
56 5847k 56 3297k 0 0 1407k 0 0:00:04 0:00:02 0:00:02 1407k
100 5847k 100 5847k 0 0 1828k 0 0:00:03 0:00:03 --:--:-- 1829k
install for i386
* installing *source* package 'PSEA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PSEA'
finding HTML links ... done
coefmat html
crplot html
em_quantvg html
expression html
expression_GSE19380 html
fmm html
groups html
information html
lmfitst html
marker html
pvalmat html
slt html
swlm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PSEA' as PSEA_1.28.0.zip
* DONE (PSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'PSEA' successfully unpacked and MD5 sums checked
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PSEA.Rcheck/examples_i386/PSEA-Ex.timings
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PSEA.Rcheck/examples_x64/PSEA-Ex.timings
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