| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:01 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OmnipathR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1330/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.2.9 (landing page) Denes Turei
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: OmnipathR |
| Version: 3.2.9 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OmnipathR_3.2.9.tar.gz && rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmnipathR.buildbin-libdir OmnipathR_3.2.9.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OmnipathR_3.2.9.zip && rm OmnipathR_3.2.9.tar.gz OmnipathR_3.2.9.zip |
| StartedAt: 2022-04-12 06:26:57 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:31:15 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 258.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OmnipathR_3.2.9.tar.gz && rm -rf OmnipathR.buildbin-libdir && mkdir OmnipathR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmnipathR.buildbin-libdir OmnipathR_3.2.9.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OmnipathR_3.2.9.zip && rm OmnipathR_3.2.9.tar.gz OmnipathR_3.2.9.zip
###
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install for i386
* installing *source* package 'OmnipathR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OmnipathR'
finding HTML links ... done
OmnipathR html
all_uniprots html
ancestors html
annotated_network html
annotation_categories html
bioplex1 html
bioplex2 html
bioplex3 html
bioplex_all html
bioplex_hct116_1 html
bma_motif_es html
bma_motif_vs html
consensuspathdb_download html
consensuspathdb_raw_table html
descendants html
dot-omnipath_options_defaults html
enzsub_graph html
evex_download html
filter_by_resource html
filter_intercell_network html
find_all_paths html
get_annotation_resources html
get_complex_genes html
get_complex_resources html
get_db html
get_enzsub_resources html
get_interaction_resources html
get_intercell_categories html
get_intercell_generic_categories html
get_intercell_resources html
get_ontology_db html
get_resources html
get_signed_ptms html
giant_component html
go_annot_download html
go_annot_slim html
go_ontology_download html
guide2pharma_download html
harmonizome_download html
hpo_download html
htridb_download html
import_all_interactions html
import_dorothea_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_tfregulons_interactions.html
import_intercell_network html
import_kinaseextra_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_KinaseExtra_Interactions.html
import_ligrecextra_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_LigrecExtra_Interactions.html
import_lncrna_mrna_interactions html
import_mirnatarget_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_miRNAtarget_Interactions.html
import_omnipath_annotations html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_Omnipath_annotations.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_annotations.html
import_omnipath_complexes html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_Omnipath_complexes.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_complexes.html
import_omnipath_enzsub html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_PTMS.html
import_omnipath_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_Omnipath_Interactions.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_Interactions.html
import_omnipath_intercell html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_Omnipath_intercell.html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_OmniPath_intercell.html
import_pathwayextra_interactions html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/OmnipathR.buildbin-libdir/00LOCK-OmnipathR/00new/OmnipathR/help/import_PathwayExtra_Interactions.html
import_post_translational_interactions
html
import_tf_mirna_interactions html
import_tf_target_interactions html
import_transcriptional_interactions html
inbiomap_download html
inbiomap_raw html
interaction_graph html
intercell_categories html
intercell_consensus_filter html
is_ontology_id html
kegg_info html
kegg_open html
kegg_pathway_annotations html
kegg_pathway_download html
kegg_pathway_list html
kegg_pathways_download html
kegg_picture html
kegg_process html
load_db html
nichenet_build_model html
nichenet_expression_data html
nichenet_gr_network html
nichenet_gr_network_evex html
nichenet_gr_network_harmonizome html
nichenet_gr_network_htridb html
nichenet_gr_network_omnipath html
nichenet_gr_network_pathwaycommons html
nichenet_gr_network_regnetwork html
nichenet_gr_network_remap html
nichenet_gr_network_trrust html
nichenet_ligand_activities html
nichenet_ligand_target_links html
nichenet_ligand_target_matrix html
nichenet_lr_network html
nichenet_lr_network_guide2pharma html
nichenet_lr_network_omnipath html
nichenet_lr_network_ramilowski html
nichenet_main html
nichenet_networks html
nichenet_optimization html
nichenet_remove_orphan_ligands html
nichenet_results_dir html
nichenet_signaling_network html
nichenet_signaling_network_cpdb html
nichenet_signaling_network_evex html
nichenet_signaling_network_harmonizome
html
nichenet_signaling_network_inbiomap html
nichenet_signaling_network_omnipath html
nichenet_signaling_network_pathwaycommons
html
nichenet_signaling_network_vinayagam html
nichenet_test html
nichenet_workarounds html
obo_parser html
omnipath_cache_autoclean html
omnipath_cache_clean html
omnipath_cache_clean_db html
omnipath_cache_download_ready html
omnipath_cache_filter_versions html
omnipath_cache_get html
omnipath_cache_key html
omnipath_cache_latest_or_new html
omnipath_cache_latest_version html
omnipath_cache_load html
omnipath_cache_move_in html
omnipath_cache_remove html
omnipath_cache_save html
omnipath_cache_search html
omnipath_cache_set_ext html
omnipath_cache_update_status html
omnipath_cache_wipe html
omnipath_get_config_path html
omnipath_load_config html
omnipath_log html
omnipath_logfile html
omnipath_msg html
omnipath_reset_config html
omnipath_save_config html
omnipath_set_cachedir html
omnipath_set_console_loglevel html
omnipath_set_logfile_loglevel html
omnipath_set_loglevel html
omnipath_show_db html
omnipath_unlock_cache_db html
ontology_ensure_id html
ontology_ensure_name html
ontology_name_id html
pathwaycommons_download html
pivot_annotations html
preppi_download html
preppi_filter html
print_bma_motif_es html
print_bma_motif_vs html
print_interactions html
print_path_es html
print_path_vs html
ramilowski_download html
regnetwork_directions html
regnetwork_download html
relations_list_to_table html
relations_table_to_graph html
relations_table_to_list html
remap_dorothea_download html
remap_filtered html
remap_tf_target_download html
resources_colname html
simplify_intercell_network html
swap_relations html
tfcensus_download html
translate_ids html
trrust_download html
uniprot_full_id_mapping_table html
uniprot_id_mapping_table html
unique_intercell_network html
vinayagam_download html
walk_ontology_tree html
zenodo_download html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2022-04-12 06:27:54] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 06:27:54] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 06:27:54] [TRACE] [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2022-04-12 06:27:57] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 06:27:57] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 06:27:57] [TRACE] [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OmnipathR' ...
** testing if installed package can be loaded
[2022-04-12 06:28:34] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 06:28:35] [INFO] [OmnipathR] Welcome to OmnipathR!
[2022-04-12 06:28:35] [TRACE] [OmnipathR] Cache locked: FALSE
* MD5 sums
packaged installation of 'OmnipathR' as OmnipathR_3.2.9.zip
* DONE (OmnipathR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'OmnipathR' successfully unpacked and MD5 sums checked