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This page was generated on 2022-04-13 12:06:57 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for MSstatsPTM on tokay2


To the developers/maintainers of the MSstatsPTM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsPTM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1231/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSstatsPTM 1.4.2  (landing page)
Devon Kohler
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/MSstatsPTM
git_branch: RELEASE_3_14
git_last_commit: 19f6303
git_last_commit_date: 2021-12-21 10:39:13 -0400 (Tue, 21 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MSstatsPTM
Version: 1.4.2
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsPTM_1.4.2.tar.gz && rm -rf MSstatsPTM.buildbin-libdir && mkdir MSstatsPTM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsPTM.buildbin-libdir MSstatsPTM_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsPTM_1.4.2.zip && rm MSstatsPTM_1.4.2.tar.gz MSstatsPTM_1.4.2.zip
StartedAt: 2022-04-12 05:25:38 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:27:42 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 123.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MSstatsPTM_1.4.2.tar.gz && rm -rf MSstatsPTM.buildbin-libdir && mkdir MSstatsPTM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MSstatsPTM.buildbin-libdir MSstatsPTM_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MSstatsPTM_1.4.2.zip && rm MSstatsPTM_1.4.2.tar.gz MSstatsPTM_1.4.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  7 7289k    7  520k    0     0  1258k      0  0:00:05 --:--:--  0:00:05 1257k
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100 7289k  100 7289k    0     0  2803k      0  0:00:02  0:00:02 --:--:-- 2803k

install for i386

* installing *source* package 'MSstatsPTM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c model_adjustment.cpp -o model_adjustment.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsPTM.dll tmp.def RcppExports.o model_adjustment.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSstatsPTM.buildbin-libdir/00LOCK-MSstatsPTM/00new/MSstatsPTM/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSstatsPTM'
    finding HTML links ... done
    MSstatsPTM                              html  
    MaxQtoMSstatsPTMFormat                  html  
    ProgenesistoMSstatsPTMFormat            html  
    SpectronauttoMSstatsPTMFormat           html  
    annotSite                               html  
    dataProcessPlotsPTM                     html  
    dataSummarizationPTM                    html  
    dataSummarizationPTM_TMT                html  
    groupComparisonPTM                      html  
    groupComparisonPlotsPTM                 html  
    locateMod                               html  
    locatePTM                               html  
    raw.input                               html  
    raw.input.tmt                           html  
    summary.data                            html  
    summary.data.tmt                        html  
    tidyFasta                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MSstatsPTM' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c model_adjustment.cpp -o model_adjustment.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o MSstatsPTM.dll tmp.def RcppExports.o model_adjustment.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/MSstatsPTM.buildbin-libdir/MSstatsPTM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MSstatsPTM' as MSstatsPTM_1.4.2.zip
* DONE (MSstatsPTM)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MSstatsPTM' successfully unpacked and MD5 sums checked