| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:56 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MSGFplus package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSGFplus.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1218/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Thomas Lin Pedersen
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: MSGFplus |
| Version: 1.28.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch MSGFplus |
| StartedAt: 2022-04-12 04:11:42 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:15:17 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 215.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch MSGFplus
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* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
* installing *source* package 'MSGFplus' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MSGFplus'
finding HTML links ... done
MSGFplus-package html
chargeRange html
db html
enzyme html
fragmentation html
getMSGFpar html
instrument html
isotopeError html
lengthRange html
matches html
mods html
msgfAsync-class html
msgfPar-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/meat/MSGFplus/man/msgfPar-class.Rd:121: missing link 'msgfParGUI'
Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/meat/MSGFplus/man/msgfPar-class.Rd:148: missing link 'msgfParGUI'
msgfPar html
msgfParChargeRange-class html
msgfParEnzyme-class html
msgfParFragmentation-class html
msgfParFromID html
msgfParInstrument-class html
msgfParIsotopeError-class html
msgfParLengthRange-class html
msgfParMatches-class html
msgfParModification-class html
msgfParModificationList-class html
msgfParNtt-class html
msgfParProtocol-class html
msgfParTda-class html
msgfParTolerance-class html
ntt html
protocol html
runMSGF html
tda html
tolerance html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'MSGFplus' is deprecated and will be removed from Bioconductor
version 3.15
** testing if installed package can be loaded from final location
Warning: Package 'MSGFplus' is deprecated and will be removed from Bioconductor
version 3.15
** testing if installed package keeps a record of temporary installation path
* DONE (MSGFplus)
Making 'packages.html' ... done