Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:50 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for MAST on tokay2


To the developers/maintainers of the MAST package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAST.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1055/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAST 1.20.0  (landing page)
Andrew McDavid
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/MAST
git_branch: RELEASE_3_14
git_last_commit: d4387f9
git_last_commit_date: 2021-10-26 12:30:38 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MAST
Version: 1.20.0
Command: rm -rf MAST.buildbin-libdir && mkdir MAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAST.buildbin-libdir MAST_1.20.0.tar.gz
StartedAt: 2022-04-13 06:31:34 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:32:39 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 65.3 seconds
RetCode: 0
Status:   OK  
PackageFile: MAST_1.20.0.zip
PackageFileSize: 6.1 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MAST.buildbin-libdir && mkdir MAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAST.buildbin-libdir MAST_1.20.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'MAST' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MAST'
    finding HTML links ... done
    BayesGLMlike-class                      html  
    CovFromBoots                            html  
    Drop                                    html  
    FromFlatDF                              html  
    FromMatrix                              html  
    GLMlike-class                           html  
    GSEATests-class                         html  
    Hypothesis                              html  
    LMERlike-class                          html  
    LMlike-class                            html  
    LRT                                     html  
    MAST-defunct                            html  
    finding level-2 HTML links ... done

    MAST-package                            html  
    SceToSingleCellAssay                    html  
    ZlmFit-class                            html  
    applyFlat                               html  
    bootVcov1                               html  
    calcZ                                   html  
    colData-set-SingleCellAssay-DataFrame-method
                                            html  
    collectResiduals                        html  
    computeEtFromCt                         html  
    convertMASTClassicToSingleCellAssay     html  
    defaultAssay                            html  
    defaultPrior                            html  
    dof                                     html  
    ebayes                                  html  
    expavg                                  html  
    filterLowExpressedGenes                 html  
    fit                                     html  
    freq                                    html  
    getConcordance                          html  
    getwellKey                              html  
    gseaAfterBoot                           html  
    hushWarning                             html  
    impute                                  html  
    influence.bayesglm                      html  
    invlogit                                html  
    logFC                                   html  
    logmean                                 html  
    lrTest-ZlmFit-character-method          html  
    lrTest                                  html  
    maits-dataset                           html  
    mast_filter                             html  
    melt.SingleCellAssay                    html  
    model.matrix-set                        html  
    model.matrix                            html  
    myBiplot                                html  
    plot.thresholdSCRNACountMatrix          html  
    plotSCAConcordance                      html  
    plotlrt                                 html  
    predict.ZlmFit                          html  
    predicted_sig-dataset                   html  
    primerAverage                           html  
    print.summaryZlmFit                     html  
    read.fluidigm                           html  
    removeResponse                          html  
    rstandard.bayesglm                      html  
    se.coef                                 html  
    show                                    html  
    split-SingleCellAssay-character-method
                                            html  
    stat_ell                                html  
    subset-SingleCellAssay-method           html  
    summarize                               html  
    summary-GSEATests-method                html  
    summary-ZlmFit-method                   html  
    summary.thresholdSCRNACountMatrix       html  
    thresholdSCRNACountMatrix               html  
    vbeta-dataset                           html  
    vbetaFA-dataset                         html  
    waldTest-ZlmFit-matrix-method           html  
    waldTest                                html  
    xform                                   html  
    zlm                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MAST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MAST' as MAST_1.20.0.zip
* DONE (MAST)