| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:45 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the IntramiRExploreR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IntramiRExploreR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 947/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IntramiRExploreR 1.16.0 (landing page) Surajit Bhattacharya
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: IntramiRExploreR |
| Version: 1.16.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IntramiRExploreR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings IntramiRExploreR_1.16.0.tar.gz |
| StartedAt: 2022-04-12 21:35:12 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 21:37:01 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 108.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: IntramiRExploreR.Rcheck |
| Warnings: 2 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IntramiRExploreR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings IntramiRExploreR_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/IntramiRExploreR.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IntramiRExploreR/DESCRIPTION' ... OK
* this is package 'IntramiRExploreR' version '1.16.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.travis.yml
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'IntramiRExploreR' can be installed ... WARNING
Found the following significant warnings:
Note: possible error in 'FGNet_report(feaResults_topGO, ': unused argument (plotKeggPw = FALSE)
Warning: Package 'IntramiRExploreR' is deprecated and will be removed from
See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/IntramiRExploreR.Rcheck/00install.out' for details.
Information on the location(s) of code generating the 'Note's can be
obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
to 'yes'.
* checking installed package size ... NOTE
installed size is 13.3Mb
sub-directories of 1Mb or more:
data 12.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GetGOS_ALL: possible error in FGNet_report(feaResults_topGO, plotKeggPw
= FALSE): unused argument (plotKeggPw = FALSE)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
LazyData DB of 12.9 MB without LazyDataCompression set
See ยง1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/IntramiRExploreR.Rcheck/00check.log'
for details.
IntramiRExploreR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/IntramiRExploreR_1.16.0.tar.gz && rm -rf IntramiRExploreR.buildbin-libdir && mkdir IntramiRExploreR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IntramiRExploreR.buildbin-libdir IntramiRExploreR_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL IntramiRExploreR_1.16.0.zip && rm IntramiRExploreR_1.16.0.tar.gz IntramiRExploreR_1.16.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
8 9102k 8 735k 0 0 821k 0 0:00:11 --:--:-- 0:00:11 820k
27 9102k 27 2486k 0 0 1311k 0 0:00:06 0:00:01 0:00:05 1311k
56 9102k 56 5152k 0 0 1777k 0 0:00:05 0:00:02 0:00:03 1777k
96 9102k 96 8743k 0 0 2232k 0 0:00:04 0:00:03 0:00:01 2232k
100 9102k 100 9102k 0 0 2279k 0 0:00:03 0:00:03 --:--:-- 2279k
install for i386
* installing *source* package 'IntramiRExploreR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'FGNet_report(feaResults_topGO, ': unused argument (plotKeggPw = FALSE)
** help
*** installing help indices
converting help for package 'IntramiRExploreR'
finding HTML links ... done
Affy1_Distance_Final html
Affy1_Pearson_Final html
Affy2_Distance_Final html
Affy2_Pearson_Final html
Gene_Visualisation html
GetGOS_ALL html
IntramiRExploreR html
Visualisation html
extract_HostGene html
extract_intragenic_miR html
genes_Stat html
miRNA_ID_to_Function html
miRNA_summary_DB html
miRTargets_Stat html
** building package indices
** installing vignettes
'IntramiRExploreR_vignettes.Rmd' using 'UTF-8'
** testing if installed package can be loaded from temporary location
Warning: Package 'IntramiRExploreR' is deprecated and will be removed from
Bioconductor version 3.14
** testing if installed package can be loaded from final location
Warning: Package 'IntramiRExploreR' is deprecated and will be removed from
Bioconductor version 3.14
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'IntramiRExploreR' ...
** testing if installed package can be loaded
Warning: Package 'IntramiRExploreR' is deprecated and will be removed from
Bioconductor version 3.14
* MD5 sums
packaged installation of 'IntramiRExploreR' as IntramiRExploreR_1.16.0.zip
* DONE (IntramiRExploreR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'IntramiRExploreR' successfully unpacked and MD5 sums checked
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IntramiRExploreR.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IntramiRExploreR)
Warning message:
Package 'IntramiRExploreR' is deprecated and will be removed from
Bioconductor version 3.14
>
> test_check("IntramiRExploreR")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
>
> proc.time()
user system elapsed
1.28 0.09 1.35
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IntramiRExploreR.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IntramiRExploreR)
Warning message:
Package 'IntramiRExploreR' is deprecated and will be removed from
Bioconductor version 3.14
>
> test_check("IntramiRExploreR")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
>
> proc.time()
user system elapsed
1.28 0.10 1.37
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IntramiRExploreR.Rcheck/examples_i386/IntramiRExploreR-Ex.timings
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IntramiRExploreR.Rcheck/examples_x64/IntramiRExploreR-Ex.timings
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