Back to Multiple platform build/check report for BioC 3.14
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:06:46 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for IVAS on tokay2


To the developers/maintainers of the IVAS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IVAS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 972/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IVAS 2.14.0  (landing page)
Seonggyun Han
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/IVAS
git_branch: RELEASE_3_14
git_last_commit: cb2ad75
git_last_commit_date: 2021-10-26 12:18:38 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: IVAS
Version: 2.14.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/IVAS_2.14.0.tar.gz && rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL IVAS_2.14.0.zip && rm IVAS_2.14.0.tar.gz IVAS_2.14.0.zip
StartedAt: 2022-04-12 06:44:15 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:46:03 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 107.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/IVAS_2.14.0.tar.gz && rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL IVAS_2.14.0.zip && rm IVAS_2.14.0.tar.gz IVAS_2.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 77391  100 77391    0     0   161k      0 --:--:-- --:--:-- --:--:--  161k
100 77391  100 77391    0     0   160k      0 --:--:-- --:--:-- --:--:--  160k

install for i386

* installing *source* package 'IVAS' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: next used in wrong context: no loop is visible 
** help
*** installing help indices
  converting help for package 'IVAS'
    finding HTML links ... done
    ASdb-class                              html  
    CalSigSNP                               html  
    IVAS-deprecated                         html  
    IVAS-package                            html  
    MsqtlFinder                             html  
    RatioFromFPKM                           html  
    Splicingfinder                          html  
    calSignificant                          html  
    chrseparate                             html  
    finding level-2 HTML links ... done

    findAlternative                         html  
    findOversnp                             html  
    sQTLsFinder                             html  
    sampleexp                               html  
    samplesnp                               html  
    samplesnplocus                          html  
    saveBplot                               html  
    sqtlfinder                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'IVAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IVAS' as IVAS_2.14.0.zip
* DONE (IVAS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'IVAS' successfully unpacked and MD5 sums checked