Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:42 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for HiTC on tokay2


To the developers/maintainers of the HiTC package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiTC.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 879/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiTC 1.38.0  (landing page)
Nicolas Servant
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/HiTC
git_branch: RELEASE_3_14
git_last_commit: 2b50c43
git_last_commit_date: 2021-10-26 12:02:53 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HiTC
Version: 1.38.0
Command: rm -rf HiTC.buildbin-libdir && mkdir HiTC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiTC.buildbin-libdir HiTC_1.38.0.tar.gz
StartedAt: 2022-04-13 06:24:59 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:26:04 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 64.7 seconds
RetCode: 0
Status:   OK  
PackageFile: HiTC_1.38.0.zip
PackageFileSize: 3.629 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf HiTC.buildbin-libdir && mkdir HiTC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiTC.buildbin-libdir HiTC_1.38.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'HiTC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HiTC'
    finding HTML links ... done
    CQC                                     html  
    HTCexp-class                            html  
    HTClist-class                           html  
    HiTC-internal                           html  
    Nora_5C                                 html  
    binningC                                html  
    directionalityIndex                     html  
    discretize                              html  
    export.my5C                             html  
    exportC                                 html  
    extractRegion                           html  
    getAnnotatedRestrictionSites            html  
    getExpectedCounts                       html  
    getPearsonMap                           html  
    getRestrictionFragmentsPerChromosome    html  
    import.my5C                             html  
    importC                                 html  
    intervalsDist                           html  
    mapC                                    html  
    normICE                                 html  
    normLGF                                 html  
    pca.hic                                 html  
    removeIntervals                         html  
    setGenomicFeatures                      html  
    setIntervalScale                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HiTC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiTC' as HiTC_1.38.0.zip
* DONE (HiTC)