Merve Sahin
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/HiCDCPlus |
| git_branch: RELEASE_3_14 |
| git_last_commit: 0d0adfa |
| git_last_commit_date: 2022-01-23 12:47:38 -0400 (Sun, 23 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:42 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HiCDCPlus package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCDCPlus.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 868/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCDCPlus 1.2.1 (landing page) Merve Sahin
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HiCDCPlus |
| Version: 1.2.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCDCPlus_1.2.1.tar.gz && rm -rf HiCDCPlus.buildbin-libdir && mkdir HiCDCPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCDCPlus.buildbin-libdir HiCDCPlus_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCDCPlus_1.2.1.zip && rm HiCDCPlus_1.2.1.tar.gz HiCDCPlus_1.2.1.zip |
| StartedAt: 2022-04-12 07:18:53 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:20:37 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 103.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCDCPlus_1.2.1.tar.gz && rm -rf HiCDCPlus.buildbin-libdir && mkdir HiCDCPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCDCPlus.buildbin-libdir HiCDCPlus_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCDCPlus_1.2.1.zip && rm HiCDCPlus_1.2.1.tar.gz HiCDCPlus_1.2.1.zip
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install for i386
* installing *source* package 'HiCDCPlus' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c straw.cpp -o straw.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/HiCDCPlus.buildbin-libdir/00LOCK-HiCDCPlus/00new/HiCDCPlus/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HiCDCPlus'
finding HTML links ... done
HTClist2gi_list html
HiCDCPlus html
HiCDCPlus_chr html
HiCDCPlus_parallel html
add_1D_features html
add_2D_features html
add_hic_counts html
add_hicpro_allvalidpairs_counts html
add_hicpro_matrix_counts html
construct_features html
construct_features_chr html
construct_features_parallel html
expand_1D_features html
extract_hic_eigenvectors html
generate_binned_gi_list html
generate_bintolen_gi_list html
generate_df_gi_list html
get_chr_sizes html
get_chrs html
get_enzyme_cutsites html
gi_list2HTClist html
gi_list_Dthreshold.detect html
gi_list_binsize_detect html
gi_list_read html
gi_list_topdom html
gi_list_validate html
gi_list_write html
hic2icenorm_gi_list html
hicdc2hic html
hicdcdiff html
straw html
straw_dump html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HiCDCPlus' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c straw.cpp -o straw.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/HiCDCPlus.buildbin-libdir/HiCDCPlus/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCDCPlus' as HiCDCPlus_1.2.1.zip
* DONE (HiCDCPlus)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'HiCDCPlus' successfully unpacked and MD5 sums checked