Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:41 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for Heatplus on tokay2


To the developers/maintainers of the Heatplus package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Heatplus.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 858/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Heatplus 3.2.0  (landing page)
Alexander Ploner
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/Heatplus
git_branch: RELEASE_3_14
git_last_commit: b0a95ee
git_last_commit_date: 2021-10-26 11:49:32 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: Heatplus
Version: 3.2.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Heatplus.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Heatplus_3.2.0.tar.gz
StartedAt: 2022-04-12 21:03:38 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 21:04:16 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 38.4 seconds
RetCode: 0
Status:   OK  
CheckDir: Heatplus.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Heatplus.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Heatplus_3.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/Heatplus.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Heatplus/DESCRIPTION' ... OK
* this is package 'Heatplus' version '3.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Heatplus' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'stats:::plotNode'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annHeatmap2: no visible global function definition for 'clustfun'
annHeatmap2: no visible global function definition for 'distfun'
annHeatmap2: no visible binding for global variable 'cuth'
annHeatmap2: no visible binding for global variable 'asIs'
annHeatmap2: no visible binding for global variable 'inclRef'
Undefined global functions or variables:
  asIs clustfun cuth distfun inclRef
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/Heatplus.Rcheck/00check.log'
for details.



Installation output

Heatplus.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Heatplus_3.2.0.tar.gz && rm -rf Heatplus.buildbin-libdir && mkdir Heatplus.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Heatplus.buildbin-libdir Heatplus_3.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Heatplus_3.2.0.zip && rm Heatplus_3.2.0.tar.gz Heatplus_3.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 60888  100 60888    0     0   121k      0 --:--:-- --:--:-- --:--:--  121k

install for i386

* installing *source* package 'Heatplus' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Heatplus'
    finding HTML links ... done
    BrewerClusterCol                        html  
    finding level-2 HTML links ... done

    RGBColVec                               html  
    Undocumented                            html  
    annHeatmap                              html  
    annHeatmap2                             html  
    breakColors                             html  
    convAnnData                             html  
    doLegend                                html  
    g2r.colors                              html  
    heatmapLayout                           html  
    heatmap_2                               html  
    heatmap_plus                            html  
    modifyExistingList                      html  
    niceBreaks                              html  
    oldCutplot.dendrogram                   html  
    oldPicketplot                           html  
    picketPlot                              html  
    picketPlotControl                       html  
    plot.annHeatmap                         html  
    print.annHeatmap                        html  
    regHeatmap                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Heatplus' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Heatplus' as Heatplus_3.2.0.zip
* DONE (Heatplus)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'Heatplus' successfully unpacked and MD5 sums checked

Tests output


Example timings

Heatplus.Rcheck/examples_i386/Heatplus-Ex.timings

nameusersystemelapsed
BrewerClusterCol0.050.000.04
RGBColVec000
annHeatmap0.900.020.92
annHeatmap20.140.000.14
breakColors0.020.000.02
convAnnData0.030.000.03
doLegend000
g2r.colors0.010.000.01
heatmapLayout000
heatmap_2000
heatmap_plus000
modifyExistingList000
niceBreaks000
oldCutplot.dendrogram000
oldPicketplot000
picketPlot0.130.000.13
plot.annHeatmap0.140.030.17
print.annHeatmap0.020.000.02
regHeatmap0.010.000.01

Heatplus.Rcheck/examples_x64/Heatplus-Ex.timings

nameusersystemelapsed
BrewerClusterCol0.050.000.05
RGBColVec000
annHeatmap0.930.030.95
annHeatmap20.160.000.15
breakColors0.010.000.02
convAnnData0.030.000.03
doLegend0.020.000.01
g2r.colors000
heatmapLayout000
heatmap_2000
heatmap_plus000
modifyExistingList000
niceBreaks000
oldCutplot.dendrogram000
oldPicketplot000
picketPlot0.110.010.13
plot.annHeatmap0.170.000.17
print.annHeatmap0.020.000.02
regHeatmap0.030.000.03