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This page was generated on 2022-04-13 12:06:37 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for GenomicInteractions on tokay2


To the developers/maintainers of the GenomicInteractions package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicInteractions.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 754/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicInteractions 1.28.0  (landing page)
Liz Ing-Simmons
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/GenomicInteractions
git_branch: RELEASE_3_14
git_last_commit: a4e55c9
git_last_commit_date: 2021-10-26 12:16:08 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GenomicInteractions
Version: 1.28.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GenomicInteractions_1.28.0.tar.gz && rm -rf GenomicInteractions.buildbin-libdir && mkdir GenomicInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicInteractions.buildbin-libdir GenomicInteractions_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GenomicInteractions_1.28.0.zip && rm GenomicInteractions_1.28.0.tar.gz GenomicInteractions_1.28.0.zip
StartedAt: 2022-04-12 07:16:05 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:18:51 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 166.2 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GenomicInteractions_1.28.0.tar.gz && rm -rf GenomicInteractions.buildbin-libdir && mkdir GenomicInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicInteractions.buildbin-libdir GenomicInteractions_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GenomicInteractions_1.28.0.zip && rm GenomicInteractions_1.28.0.tar.gz GenomicInteractions_1.28.0.zip
###
##############################################################################
##############################################################################


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100 3314k  100 3314k    0     0  2133k      0  0:00:01  0:00:01 --:--:-- 2132k

install for i386

* installing *source* package 'GenomicInteractions' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicInteractions'
    finding HTML links ... done
    GInteractions-subsetByFeatures-methods
                                            html  
    GenomicInteractions-class               html  
    GenomicInteractions-package             html  
    GenomicInteractions                     html  
    InteractionHelpers                      html  
    InteractionTrack-class                  html  
    InteractionTrack                        html  
    annotateInteractions                    html  
    annotateRegions                         html  
    asBED-GInteractions-method              html  
    availableDisplayPars                    html  
    calculateDistances                      html  
    categoriseInteractions                  html  
    countsBetweenAnchors-methods            html  
    dot-importHicLib                        html  
    dot-importHomer                         html  
    dot-processChiapetName                  html  
    dot-readBam                             html  
    dot-readTwoBams                         html  
    dot-validateInput                       html  
    export.bed12                            html  
    export.bedpe                            html  
    export.chiasig                          html  
    export.igraph                           html  
    get_binom_ligation_threshold            html  
    get_self_ligation_threshold             html  
    getters                                 html  
    hg19.refseq.transcripts                 html  
    hic_example_data                        html  
    makeGenomicInteractionsFromFile         html  
    mm9_refseq_promoters                    html  
    plotAvgViewpoint                        html  
    plotCisTrans                            html  
    plotCounts                              html  
    plotDists                               html  
    plotInteractionAnnotations              html  
    plotSummaryStats                        html  
    plotViewpoint                           html  
    removeDups                              html  
    resetAnnotations                        html  
    sameStrand                              html  
    setters                                 html  
    sum-GInteractions-method                html  
    summariseByFeaturePairs                 html  
    summariseByFeatures                     html  
    thymus_enh                              html  
    updateObject-GenomicInteractions-method
                                            html  
    viewPoint                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenomicInteractions' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicInteractions' as GenomicInteractions_1.28.0.zip
* DONE (GenomicInteractions)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GenomicInteractions' successfully unpacked and MD5 sums checked