Back to Multiple platform build/check report for BioC 3.14
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:06:35 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for GAPGOM on tokay2


To the developers/maintainers of the GAPGOM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GAPGOM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 697/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GAPGOM 1.10.0  (landing page)
Rezvan Ehsani
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/GAPGOM
git_branch: RELEASE_3_14
git_last_commit: f096758
git_last_commit_date: 2021-10-26 12:49:12 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GAPGOM
Version: 1.10.0
Command: rm -rf GAPGOM.buildbin-libdir && mkdir GAPGOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GAPGOM.buildbin-libdir GAPGOM_1.10.0.tar.gz
StartedAt: 2022-04-13 06:15:52 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:16:33 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 40.2 seconds
RetCode: 0
Status:   OK  
PackageFile: GAPGOM_1.10.0.zip
PackageFileSize: 2.225 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GAPGOM.buildbin-libdir && mkdir GAPGOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GAPGOM.buildbin-libdir GAPGOM_1.10.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'GAPGOM' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GAPGOM'
    finding HTML links ... done
    ambiguous_functions                     html  
    dag_funcs                               html  
    dot-enrichment_analysis                 html  
    dot-entrezraw_to_entrez                 html  
    dot-ext_id_to_term_id                   html  
    dot-fantom_filter_entrez                html  
    dot-generate_translation_df             html  
    dot-get_package_version                 html  
    dot-go_ids_lookup                       html  
    dot-organism_to_species_lib             html  
    dot-prepare_score_df                    html  
    dot-prepare_score_matrix_topoicsim      html  
    dot-prepare_variables_topoicsim         html  
    dot-resolve_genes_unique_gos            html  
    dot-resolve_keys_col                    html  
    dot-set_identical_items                 html  
    dot-set_values                          html  
    dot-term_id_to_ext_id                   html  
    dot-topo_ic_sim_g1g2                    html  
    dot-topo_ic_sim_geneset                 html  
    dot-topo_ic_sim_titj                    html  
    dot-unique_combos                       html  
    expression_prediction                   html  
    expression_semantic_scoring             html  
    expset                                  html  
    fantom_download                         html  
    fantom_load_raw                         html  
    fantom_to_expset                        html  
    geometrical_measures                    html  
    glb_checks                              html  
    id_translation_df                       html  
    misc_functions                          html  
    set_go_data                             html  
    topo_ic_sim_genes                       html  
    topo_ic_sim_term                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GAPGOM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GAPGOM' as GAPGOM_1.10.0.zip
* DONE (GAPGOM)