Felipe Albrecht
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/DeepBlueR |
| git_branch: RELEASE_3_14 |
| git_last_commit: cbb9c75 |
| git_last_commit_date: 2021-10-26 12:28:59 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:05:15 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the DeepBlueR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepBlueR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 469/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DeepBlueR 1.20.0 (landing page) Felipe Albrecht
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: DeepBlueR |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:DeepBlueR.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings DeepBlueR_1.20.0.tar.gz |
| StartedAt: 2022-04-12 07:05:07 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:09:40 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 272.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DeepBlueR.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:DeepBlueR.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings DeepBlueR_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/DeepBlueR.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DeepBlueR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DeepBlueR’ version ‘1.20.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DeepBlueR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: deepblue_enrich_regions_fast.Rd:35-38: Dropping empty section \examples * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.14-bioc/meat/DeepBlueR.Rcheck/00check.log’ for details.
DeepBlueR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL DeepBlueR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘DeepBlueR’ ... ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Called method: deepblue_list_column_types Reported status was: okay Called method: deepblue_info Reported status was: okay ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DeepBlueR)
DeepBlueR.Rcheck/DeepBlueR-Ex.timings
| name | user | system | elapsed | |
| deepblue_aggregate | 0.065 | 0.004 | 0.899 | |
| deepblue_batch_export_results | 1.001 | 0.072 | 3.931 | |
| deepblue_binning | 0.042 | 0.000 | 0.625 | |
| deepblue_cache_status | 0.004 | 0.000 | 0.004 | |
| deepblue_cancel_request | 0.016 | 0.000 | 0.310 | |
| deepblue_chromosomes | 0.044 | 0.000 | 0.336 | |
| deepblue_clear_cache | 0.001 | 0.000 | 0.001 | |
| deepblue_collection_experiments_count | 0.060 | 0.016 | 0.633 | |
| deepblue_commands | 0.078 | 0.016 | 1.492 | |
| deepblue_count_gene_ontology_terms | 0.115 | 0.020 | 0.609 | |
| deepblue_count_regions | 0.048 | 0.000 | 0.601 | |
| deepblue_coverage | 0.044 | 0.000 | 0.605 | |
| deepblue_delete_request_from_cache | 0.000 | 0.003 | 0.002 | |
| deepblue_diff | 0.130 | 0.012 | 0.723 | |
| deepblue_distinct_column_values | 0.040 | 0.001 | 0.631 | |
| deepblue_download_request_data | 0.208 | 0.027 | 1.619 | |
| deepblue_echo | 0.018 | 0.001 | 0.304 | |
| deepblue_enrich_regions_go_terms | 0.061 | 0.011 | 0.918 | |
| deepblue_enrich_regions_overlap | 0.546 | 0.056 | 4.664 | |
| deepblue_export_bed | 0.248 | 0.020 | 2.278 | |
| deepblue_export_meta_data | 0.396 | 0.051 | 0.853 | |
| deepblue_export_tab | 0.102 | 0.012 | 1.157 | |
| deepblue_extend | 0.046 | 0.000 | 0.611 | |
| deepblue_extract_ids | 0.001 | 0.000 | 0.001 | |
| deepblue_extract_names | 0.001 | 0.000 | 0.001 | |
| deepblue_faceting_experiments | 0.034 | 0.000 | 0.667 | |
| deepblue_filter_regions | 0.087 | 0.024 | 0.402 | |
| deepblue_find_motif | 0.034 | 0.012 | 0.336 | |
| deepblue_flank | 0.043 | 0.005 | 0.561 | |
| deepblue_get_biosource_children | 0.017 | 0.004 | 0.308 | |
| deepblue_get_biosource_parents | 0.016 | 0.000 | 0.309 | |
| deepblue_get_biosource_related | 0.022 | 0.000 | 0.326 | |
| deepblue_get_biosource_synonyms | 0.017 | 0.004 | 0.310 | |
| deepblue_get_experiments_by_query | 0.016 | 0.004 | 0.305 | |
| deepblue_get_regions | 0.036 | 0.008 | 0.709 | |
| deepblue_get_request_data | 0.069 | 0.003 | 1.203 | |
| deepblue_info | 0.040 | 0.004 | 0.334 | |
| deepblue_input_regions | 0.023 | 0.000 | 0.353 | |
| deepblue_intersection | 0.068 | 0.000 | 0.891 | |
| deepblue_is_biosource | 0.018 | 0.000 | 0.305 | |
| deepblue_liftover | 0.430 | 0.047 | 4.714 | |
| deepblue_list_annotations | 0.040 | 0.008 | 0.338 | |
| deepblue_list_biosources | 0.012 | 0.008 | 0.304 | |
| deepblue_list_cached_requests | 0.003 | 0.000 | 0.003 | |
| deepblue_list_column_types | 0.062 | 0.000 | 0.461 | |
| deepblue_list_epigenetic_marks | 0.326 | 0.012 | 1.522 | |
| deepblue_list_experiments | 0.156 | 0.000 | 0.808 | |
| deepblue_list_expressions | 0.113 | 0.004 | 0.532 | |
| deepblue_list_gene_models | 0.022 | 0.008 | 0.319 | |
| deepblue_list_genes | 0.261 | 0.004 | 1.899 | |
| deepblue_list_genomes | 0.015 | 0.004 | 0.305 | |
| deepblue_list_in_use | 0.321 | 0.040 | 2.085 | |
| deepblue_list_projects | 0.015 | 0.000 | 0.260 | |
| deepblue_list_recent_experiments | 0.030 | 0.004 | 0.325 | |
| deepblue_list_requests | 0.022 | 0.000 | 0.321 | |
| deepblue_list_samples | 0.112 | 0.012 | 1.019 | |
| deepblue_list_similar_biosources | 0.023 | 0.003 | 0.506 | |
| deepblue_list_similar_epigenetic_marks | 0.025 | 0.000 | 0.285 | |
| deepblue_list_similar_experiments | 0.014 | 0.004 | 0.884 | |
| deepblue_list_similar_genomes | 0.022 | 0.000 | 0.268 | |
| deepblue_list_similar_projects | 0.013 | 0.004 | 0.261 | |
| deepblue_list_similar_techniques | 0.021 | 0.000 | 0.310 | |
| deepblue_list_techniques | 0.032 | 0.000 | 0.319 | |
| deepblue_merge_queries | 0.058 | 0.011 | 0.855 | |
| deepblue_meta_data_to_table | 0.406 | 0.011 | 1.088 | |
| deepblue_name_to_id | 0.051 | 0.001 | 0.895 | |
| deepblue_overlap | 0.070 | 0.004 | 0.903 | |
| deepblue_preview_experiment | 0.017 | 0.000 | 0.309 | |
| deepblue_query_cache | 0.079 | 0.020 | 1.191 | |
| deepblue_query_experiment_type | 0.051 | 0.000 | 0.630 | |
| deepblue_reset_options | 0.001 | 0.000 | 0.000 | |
| deepblue_score_matrix | 0.046 | 0.004 | 0.629 | |
| deepblue_search | 0.106 | 0.036 | 0.767 | |
| deepblue_select_annotations | 0.023 | 0.004 | 0.274 | |
| deepblue_select_column | 0.303 | 0.007 | 1.620 | |
| deepblue_select_experiments | 0.016 | 0.004 | 0.271 | |
| deepblue_select_expressions | 0.023 | 0.001 | 0.270 | |
| deepblue_select_genes | 0.027 | 0.000 | 0.273 | |
| deepblue_select_regions | 0.03 | 0.00 | 0.32 | |
| deepblue_tiling_regions | 0.021 | 0.008 | 0.318 | |