Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:19 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ChIPQC on tokay2


To the developers/maintainers of the ChIPQC package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChIPQC.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 303/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPQC 1.30.0  (landing page)
Tom Carroll , Rory Stark
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/ChIPQC
git_branch: RELEASE_3_14
git_last_commit: 566bb1a
git_last_commit_date: 2021-10-26 12:12:48 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: ChIPQC
Version: 1.30.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ChIPQC_1.30.0.tar.gz && rm -rf ChIPQC.buildbin-libdir && mkdir ChIPQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPQC.buildbin-libdir ChIPQC_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ChIPQC_1.30.0.zip && rm ChIPQC_1.30.0.tar.gz ChIPQC_1.30.0.zip
StartedAt: 2022-04-12 07:06:51 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:10:22 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 211.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ChIPQC_1.30.0.tar.gz && rm -rf ChIPQC.buildbin-libdir && mkdir ChIPQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPQC.buildbin-libdir ChIPQC_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ChIPQC_1.30.0.zip && rm ChIPQC_1.30.0.tar.gz ChIPQC_1.30.0.zip
###
##############################################################################
##############################################################################


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  4 1073k    4 45687    0     0   288k      0  0:00:03 --:--:--  0:00:03  287k
100 1073k  100 1073k    0     0  1140k      0 --:--:-- --:--:-- --:--:-- 1139k

install for i386

* installing *source* package 'ChIPQC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ChIPQC'
    finding HTML links ... done
    ChIPQC-data                             html  
    finding level-2 HTML links ... done

    ChIPQC-package                          html  
    ChIPQC                                  html  
    ChIPQCexperiment-class                  html  
    ChIPQCreport                            html  
    ChIPQCsample-class                      html  
    FragmentLengthCrossCoverage-methods     html  
    Normalisedaveragepeaksignal-methods     html  
    QCannotation-methods                    html  
    QCcontrol-methods                       html  
    QCdba-methods                           html  
    QCmetadata-methods                      html  
    QCmetrics-methods                       html  
    QCsample-methods                        html  
    ReadLengthCrossCoverage-methods         html  
    RelativeCrossCoverage-methods           html  
    averagepeaksignal-methods               html  
    coveragehistogram-methods               html  
    crosscoverage-methods                   html  
    duplicateRate-methods                   html  
    duplicates-methods                      html  
    flagtagcounts-methods                   html  
    fragmentlength-methods                  html  
    frip-methods                            html  
    mapped-methods                          html  
    peaks-methods                           html  
    plotCC-methods                          html  
    plotCorHeatmap-methods                  html  
    plotCoverageHist-methods                html  
    plotFribl-methods                       html  
    plotFrip-methods                        html  
    plotPeakProfile-methods                 html  
    plotPrincomp-methods                    html  
    plotRap-methods                         html  
    plotRegi-methods                        html  
    plotSSD-methods                         html  
    readlength-methods                      html  
    reads-methods                           html  
    regi-methods                            html  
    ribl-methods                            html  
    rip-methods                             html  
    ssd-methods                             html  
** building package indices
** installing vignettes
   'ChIPQC.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChIPQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPQC' as ChIPQC_1.30.0.zip
* DONE (ChIPQC)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ChIPQC' successfully unpacked and MD5 sums checked