Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:21 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for CNVgears on tokay2


To the developers/maintainers of the CNVgears package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNVgears.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 357/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVgears 1.2.0  (landing page)
Simone Montalbano
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/CNVgears
git_branch: RELEASE_3_14
git_last_commit: 705feb3
git_last_commit_date: 2021-10-26 13:05:33 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CNVgears
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CNVgears_1.2.0.tar.gz && rm -rf CNVgears.buildbin-libdir && mkdir CNVgears.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVgears.buildbin-libdir CNVgears_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CNVgears_1.2.0.zip && rm CNVgears_1.2.0.tar.gz CNVgears_1.2.0.zip
StartedAt: 2022-04-12 04:42:11 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 04:44:01 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 110.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CNVgears_1.2.0.tar.gz && rm -rf CNVgears.buildbin-libdir && mkdir CNVgears.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVgears.buildbin-libdir CNVgears_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CNVgears_1.2.0.zip && rm CNVgears_1.2.0.tar.gz CNVgears_1.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  7 2112k    7  148k    0     0   565k      0  0:00:03 --:--:--  0:00:03  565k
 73 2112k   73 1547k    0     0  1225k      0  0:00:01  0:00:01 --:--:-- 1225k
100 2112k  100 2112k    0     0  1383k      0  0:00:01  0:00:01 --:--:-- 1383k

install for i386

* installing *source* package 'CNVgears' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNVgears'
    finding HTML links ... done
    CNVgears                                html  
    CNVresults_to_GRanges                   html  
    chr_uniform                             html  
    cleaning_filter                         html  
    cnmops_to_CNVresults                    html  
    cnvrs_create                            html  
    cnvs_inheritance                        html  
    cohort_examples                         html  
    genic_load                              html  
    genomic_locus                           html  
    hg18_chr_arms                           html  
    hg18_start_end_centromeres              html  
    hg19_chr_arms                           html  
    hg19_start_end_centromeres              html  
    hg38_chr_arms                           html  
    hg38_start_end_centromeres              html  
    immuno_regions                          html  
    inter_res_merge                         html  
    lrr_trio_plot                           html  
    markers_examples                        html  
    merge_calls                             html  
    penn_22                                 html  
    quanti_22                               html  
    read_NGS_intervals                      html  
    read_NGS_raw                            html  
    read_finalreport_raw                    html  
    read_finalreport_snps                   html  
    read_metadt                             html  
    read_results                            html  
    read_vcf                                html  
    summary.CNVresults                      html  
    telom_centrom                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CNVgears' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVgears' as CNVgears_1.2.0.zip
* DONE (CNVgears)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CNVgears' successfully unpacked and MD5 sums checked