Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-01-17 13:05:55 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for BadRegionFinder on tokay2


To the developers/maintainers of the BadRegionFinder package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BadRegionFinder.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 107/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BadRegionFinder 1.22.0  (landing page)
Sarah Sandmann
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/BadRegionFinder
git_branch: RELEASE_3_14
git_last_commit: e9d52d0
git_last_commit_date: 2021-10-26 12:26:51 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BadRegionFinder
Version: 1.22.0
Command: chmod a+r BadRegionFinder -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BadRegionFinder
StartedAt: 2022-01-16 08:18:42 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 08:19:54 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 71.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r BadRegionFinder -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BadRegionFinder
###
##############################################################################
##############################################################################


* checking for file 'BadRegionFinder/DESCRIPTION' ... OK
* preparing 'BadRegionFinder':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building 'BadRegionFinder.Rnw' using Sweave
Determine Coverage
Sample Test2_454
Sample Test2_ion
Determine target bases
Combine Information
Chromosome: 1
Chromosome: 2
Chromosome: 3
Chromosome: 4
Chromosome: 5
Chromosome: 6
Chromosome: 7
Chromosome: 8
Chromosome: 9
Chromosome: 10
Chromosome: 11
Chromosome: 12
Chromosome: 13
Chromosome: 14
Chromosome: 15
Chromosome: 16
Chromosome: 17
Chromosome: 18
Chromosome: 19
Chromosome: 20
Chromosome: 21
Chromosome: 22
Chromosome: X
Chromosome: Y
Chromosome: MT
Analyzing Chromosome 1
Analyzing Chromosome 2
Analyzing Chromosome 3
Analyzing Chromosome 4
Analyzing Chromosome 5
Analyzing Chromosome 6
Analyzing Chromosome 7
Analyzing Chromosome 8
Analyzing Chromosome 9
Analyzing Chromosome 10
Analyzing Chromosome 11
Analyzing Chromosome 12
Analyzing Chromosome 13
Analyzing Chromosome 14
Analyzing Chromosome 15
Analyzing Chromosome 16
Analyzing Chromosome 17
Analyzing Chromosome 18
Analyzing Chromosome 19
Analyzing Chromosome 20
Analyzing Chromosome 21
Analyzing Chromosome 22
Analyzing Chromosome 23
Analyzing Chromosome 24
Analyzing Chromosome 25
Analyze Chromosome 1
Analyze Chromosome 2
Analyze Chromosome 3
Analyze Chromosome 4
Analyze Chromosome 5
Analyze Chromosome 6
Analyze Chromosome 7
Analyze Chromosome 8
Analyze Chromosome 9
Analyze Chromosome 10
Analyze Chromosome 11
Analyze Chromosome 12
Analyze Chromosome 13
Analyze Chromosome 14
Analyze Chromosome 15
Analyze Chromosome 16
Analyze Chromosome 17
Analyze Chromosome 18
Analyze Chromosome 19
Analyze Chromosome 20
Analyze Chromosome 21
Analyze Chromosome 22
Analyze Chromosome 23
Analyze Chromosome 24
Analyze Chromosome 25
Warning: Ensembl will soon enforce the use of https.
Ensure the 'host' argument includes "https://"

Error: processing vignette 'BadRegionFinder.Rnw' failed with diagnostics:
 chunk 10 (label = 10) 
Error : Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.

--- failed re-building 'BadRegionFinder.Rnw'

SUMMARY: processing the following file failed:
  'BadRegionFinder.Rnw'

Error: Vignette re-building failed.
Execution halted