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This page was generated on 2022-01-17 13:07:14 -0500 (Mon, 17 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4328
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4077
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4138
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for ABAEnrichment on machv2


To the developers/maintainers of the ABAEnrichment package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ABAEnrichment.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 7/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ABAEnrichment 1.24.0  (landing page)
Steffi Grote
Snapshot Date: 2022-01-16 01:55:05 -0500 (Sun, 16 Jan 2022)
git_url: https://git.bioconductor.org/packages/ABAEnrichment
git_branch: RELEASE_3_14
git_last_commit: 5d20752
git_last_commit_date: 2021-10-26 12:22:01 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ABAEnrichment
Version: 1.24.0
Command: rm -rf ABAEnrichment.buildbin-libdir && mkdir ABAEnrichment.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ABAEnrichment_1.24.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ABAEnrichment.buildbin-libdir
StartedAt: 2022-01-16 19:52:55 -0500 (Sun, 16 Jan 2022)
EndedAt: 2022-01-16 19:53:25 -0500 (Sun, 16 Jan 2022)
EllapsedTime: 29.8 seconds
RetCode: 0
Status:   OK  
PackageFile: ABAEnrichment_1.24.0.tgz
PackageFileSize: 3.474 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ABAEnrichment.buildbin-libdir && mkdir ABAEnrichment.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ABAEnrichment_1.24.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ABAEnrichment.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ABAEnrichment.buildbin-libdir ABAEnrichment_1.24.0.tar.gz'
>>>>>>> 

* installing *source* package ‘ABAEnrichment’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c unlock_environment.cc -o unlock_environment.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ABAEnrichment.so RcppExports.o unlock_environment.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/ABAEnrichment.buildbin-libdir/00LOCK-ABAEnrichment/00new/ABAEnrichment/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ABAEnrichment)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ABAEnrichment.buildbin-libdir/ABAEnrichment/libs/ABAEnrichment.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "ABAEnrichment.buildbin-libdir/ABAEnrichment/libs/ABAEnrichment.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "ABAEnrichment.buildbin-libdir/ABAEnrichment/libs/ABAEnrichment.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "ABAEnrichment.buildbin-libdir/ABAEnrichment/libs/ABAEnrichment.so"